Keras LSTM, expected 3 but got array with shape []

Question

I am trying to find out label associated with word from annotated text. I am using a bidirectional LSTM. I have X_train which is having shape (1676, 39) and Y_train with the same shape (1676, 39).

input = Input(shape=(sequence_length,))
model = Embedding(input_dim=n_words, output_dim=20,
              input_length=sequence_length, mask_zero=True)(input)
model = Bidirectional(LSTM(units=50, return_sequences=True,
                       recurrent_dropout=0.1))(model)
out_model = TimeDistributed(Dense(50, activation="softmax"))(model) 
model = Model(input, out_model)
model.compile(optimizer="rmsprop", loss= "categorical_crossentropy", metrics=["accuracy"])
model.fit(X_train, Y_train, batch_size=32, epochs= 10,
                validation_split=0.1)

While executing this, I am getting error:

ValueError: Error when checking target: expected time_distributed_5 to have 3 dimensions, but got array with shape (1676, 39).

I am not able to find out how to feed proper dimension which is needed by the Keras LSTM model.

I don't understand your data with respect to your model. What are the values of sequence_length and n_words. Could you add the output of model.summary()? But in any case your output will have size 50 (size of your last layer). — Daniel GL

Amir Amir · Accepted Answer · 2018-09-21T15:36:28

In the LSTM you set return_sequences=True, as a result, the outputs of the layer is a Tensor with shape of [batch_size * 39 * 50]. Then you pass this Tensor to TimeDistributed layer. TimeDistributed apply Dense layer on the each time stamp. The outputs of the layer, again is [batch_size * 39 * 50]. As you see, you pass 3 dimension Tensor for prediction, while your ground truth is 2 dimension (1676, 39).

How to fix the issue?

1) Remove return_sequences=True from LSTM args.

2) Remove TimeDistributed layer and apply Dense layer directly.

inps = keras.layers.Input(shape=(39,))
embedding = keras.layers.Embedding(vocab_size, 16)(inps)
rnn = keras.layers.LSTM(50)(embedding)
dense = keras.layers.Dense(50, activation="softmax")(rnn)
prediction = keras.layers.Dense(39, activation='softmax')(dense)

Keras LSTM, expected 3 but got array with shape []

1 Answers