I have an app gateway in region A with listeners set up for apim backend both in the same vnet. I want to create another app gateway in region B in a different vnet and a listener for same apim backend in region A(using internal virtual ip). I have vnet peered the two vnets but the backend health pool for app agteway in region B does not recognize the private ip of apim in region A
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The Basic Load Balancers doesn't work in the global VNet peering. See document.
Unfortunately, APIM is one of the services which uses the basic load balancer.
So network peering won't work for your case. You would have to use VNet gateways to facilitate the vnet-to-vnet communication in this case.
