Firstly, I don't know where the OP or commenter found the "membership_1.smt2" example input. I checked the SMT-LIB benchmarks, and the source of Z3, S3, and Z3-str, and couldn't find it.
In any case, the problem was that the OP was testing a benchmark written either for S3 or Z3-str and running it against an unmodified version of Z3. S3 and Z3-str require a modified version of Z3 to handle these extensions. This is described on the S3 website [S3: A Symbolic String Solver for Web Security Analysis, http://www.comp.nus.edu.sg/~trinhmt/S3/, accessed Aug. 4, 2016]:
Modified Version of Z3 Solver
- The source code of the modified Z3 is available here.
- We modify Z3 to have the interaction between String theory and Arithmetic theory.
These newly-added API methods allows us to query the length of a string variable, and relationship between the length of different
string variables, as shown in our CCS'14 paper.
Our modified version of Z3 is also used by Z3-str GROUP for integer/string theory integration.
Grepping the (unmodified) Z3 source shows no matches for "re-begin" or "re-concat". Grepping the modified version shows that these tokes are defined in lib/seq_decl_plugin.cpp
of z3-source-060115.zip
.