I use multiple workspaces with Eclipse. I recently noticed that some of my workspaces have a lot of cruft in them from software packages that I installed and then later removed. As far as I can tell, the situation is that many packages write stuff (sometimes a lot of stuff) to the .metadata folder for every workspace I open while the package was installed. When I removed a package, it seems to clean out the .metadata folder for the workspace that I happen to have open at the time, but all the other workspaces are left with orphaned metadata. Sometimes this metadata causes problems—often, errors while opening the workspace and sometimes instability.
The only way I know to deal with this is to create a new workspace, import projects from the polluted workspace, reconstructing all my settings (a major pain) and then delete the old workspace. Is there an easier way to deal with this?