I don't think you can achieve what you're after without manipulating the restored database on the 2008 instance leveraging schemas.
When you back up the source database (in your case two), it is contained it will be restored as is on the destination, that's the main point, avoid any discrepancies between copies. Therefore, by definition, it shouldn't allow you to have a restore result which is structurally different the backed up database.
A way to achieve this would be to handle the backup/restore process first and then write a script that takes the restored databases and combine them to the actual structure you wish to have.
I hope this was helpful.