I used rvm to install ruby 1.9.3. even though it was successfully installed, it complained about libyaml. and now every time i wanna install a gem (say rails) this warning shows up:
It seems your ruby installation is missing psych (for YAML output). To eliminate this warning, please install libyaml and reinstall your ruby.
I use Mac os X 10.7 (Lion).
If not using rvm, but rather you are building and installing ruby 1.9.3 from scratch — for example, you're managing your ruby versions with rbenv — you must install libyaml first. Get it from http://pyyaml.org/; at the moment, the file you want is http://pyyaml.org/download/libyaml/yaml-0.1.4.tar.gz. Open the tarball and cd into the resulting folder. Then:
./configure --prefix=/usr/local
make
sudo make install
You are now ready to build ruby. Download ruby from http://ftp.ruby-lang.org/pub/ruby/. Open the tarball and cd into the resulting folder. Now:
./configure --prefix=/wherever/you/want/it/to/go
make
make install
(Or possibly sudo make install, depending on where you're putting it.) If using rbenv, you'll know it has worked if you switch to rbenv global 1.9.3-p194 (or whatever your version is called) and gem --version works without a warning. That worked for me on Mac OS X 10.6.8. (Update: I just tried this on Mac OS X 10.8.1 and it seems to have worked fine there too.)
If you have installed ruby on macOS with homebrew, try this solution.
rm -rf /usr/local/lib/ruby/gems/ && brew reinstall ruby
Note that this will get rid of all installed gems. Best save a list of installed gems with gem list before you run this.
I had the same problem (Lion 10.7.4), and fixed it by upgrading rvm then reinstalling ruby
1) upgrade rvm https://rvm.io//rvm/install/
curl -L https://get.rvm.io | bash -s stable --ruby
2) Then use rvm to reinstall ruby 1.9.3 (which had been previously installed with the earlier version of rvm)
rvm reinstall 1.9.3
sudo port install libyaml # or brew install libyaml
rvm get latest
rvm pkg install iconv
rvm pkg install openssl
rvm reinstall 1.9.3 --with-openssl-dir=~/.rvm/usr --with-iconv-dir=~/.rvm/usr
curl -OL http://rubyforge.org/frs/download.php/75414/linecache19-0.5.13.gem
curl -OL http://rubyforge.org/frs/download.php/75415/ruby-debug-base19-0.11.26.gem
gem install linecache19-0.5.13.gem ruby-debug-base19-0.11.26.gem -- --with-ruby-include=$rvm_path/src/ruby-1.9.3-p125/
gem install ruby-debug19
rvm reload
reload your .rvmrc (cd out, cd in)
bundle
None of these answers worked for me.
I found my answer on https://github.com/sstephenson/ruby-build/issues/119 I am on Centos 6.3 Virtual Machine.
YOU MUST install libyaml before you install ruby. IF you ALREADY installed ruby you must get rid of the files before compiling source again!!!
# cd to your ruby source location
rm -rf /usr/local/lib/ruby # clean out ruby files
./configure
make && make install
gem -v # check if error is fixed
I built the libyaml files separately from source and installed them in /usr/local/lib. The ruby that RVM created still did not see them, and rather than muck with the makefile or the system LD_LIBRARY_PATH I just copied /usr/local/lib/libyaml* to ~/.rvm/rubies/ruby-1.9.3-p327/lib/
That quieted the warning.
I tried all of these answers and still wasn't able to get it working. I installed libyaml with homebrew and then installed Ruby 1.9.3 and 2.0.0 with rvm. Each time it complained that I was missing psych (libyaml). But trying to install libyaml told me it was already installed. Rinse, repeat. Urgh.
Finally, what I did was to uninstall libyaml. Then I enabled autolibs in rvm, which (at least in OSX) allows rvm to install and manage dependencies more directly. Now when I installed the Rubies, rvm was able to install libyaml and recognize that it was in the right spot.
So if you've tried all of the other options, try actually removing libyaml and then installing your Rubies. It's count-intuitive from the error messages, but that's what finally worked for me.
I had the same problem (Cent OS 5.7), none of the above solutions worked to me.
// My console warning
/usr/local/rvm/rubies/ruby-1.9.3-p286/lib/ruby/1.9.1/yaml.rb:56:in `<top (required)>':
It seems your ruby installation is missing psych (for YAML output).
To eliminate this warning, please install libyaml and reinstall your ruby.
After doing several re-installs, I realized it's looking for yaml in ruby version of 1.9.1 instead of 1.9.3. So i downgraded
// obviously after installing `libyaml`
rvm remove all
rvm install 1.9.1
rvm use 1.9.1 --default
And it worked 8D!
On CentOS 6.3 none of the above worked. However installing libyaml from source before installing ruby resolved the problem.
$ wget http://pyyaml.org/download/libyaml/yaml-0.1.4.tar.gz
$ tar xzvf yaml-0.1.4.tar.gz
$ cd yaml-0.1.4
$ ./configure --prefix=/usr/local
$ make
$ sudo make install
and then
rvm install 1.9.3
gem install rails
I'm using
rvm 1.16.20 (version) by Wayne E. Seguin , Michal Papis [https://rvm.io/]
and also got the following error during bundle install
.rvm/rubies/ruby-1.9.3-p194/lib/ruby/1.9.1/yaml.rb:56:in `': It seems your ruby installation is missing psych (for YAML output). To eliminate this warning, please install libyaml and reinstall your ruby.
Here are three different ways to resolve this error w/o having to gem install psych
alter /etc/ld.so.conf
sudo su - root echo /usr/local/lib64 >> /etc/ld.so.conf echo /usr/local/lib >> /etc/ld.so.conf ldconfig
Fix rvm ruby 1.9.3 installation via
patch .rvm/scripts/functions/manage/ruby < ruby-1.9.3-LDFLAGS.patch rvm uninstall ruby-1.9.3-p194 export LDFLAGS='-L /usr/local/lib64 -L/usr/local/lib -Xlinker -R/usr/local/lib64 -Xlinker -R/usr/local/lib' rvm install ruby-1.9.3-p194 --disable-binary grep configure_args .rvm/src/ruby-1.9.3-p194/config.log # to confirm LDFLAG
$ diff -c .rvm/{src/rvm/,}scripts/functions/manage/ruby
*** .rvm/src/rvm/scripts/functions/manage/ruby 2012-11-10 06:28:14.000000000 +0000
--- .rvm/scripts/functions/manage/ruby 2013-01-25 17:18:00.000000000 +0000
***************
*** 106,123 ****
# when relative is in effect libyaml is installed in ruby itself so it will be moved with ruby
prefix_path="${rvm_rubies_path}/${rvm_ruby_string}" libyaml
! __rvm_update_configure_env CFLAGS="-I${rvm_rubies_path}/${rvm_ruby_string}/include"
! __rvm_update_configure_env LDFLAGS="-L${rvm_rubies_path}/${rvm_ruby_string}/lib"
if [[ -d "${rvm_rubies_path}/${rvm_ruby_string}/lib64" ]]
! then __rvm_update_configure_env LDFLAGS="-L${rvm_rubies_path}/${rvm_ruby_string}/lib64"
fi
else
libyaml_installed || libyaml # Installs libyaml
! __rvm_update_configure_env CFLAGS="-I${rvm_path}/usr/include"
! __rvm_update_configure_env LDFLAGS="-L${rvm_path}/usr/lib"
if [[ -d "${rvm_path}/usr/lib64" ]]
! then __rvm_update_configure_env LDFLAGS="-L${rvm_path}/usr/lib64"
fi
fi
--- 106,123 ----
# when relative is in effect libyaml is installed in ruby itself so it will be moved with ruby
prefix_path="${rvm_rubies_path}/${rvm_ruby_string}" libyaml
! __rvm_update_configure_env CFLAGS="-I${rvm_rubies_path}/${rvm_ruby_string}/include ${CFLAGS}"
! __rvm_update_configure_env LDFLAGS="-L${rvm_rubies_path}/${rvm_ruby_string}/lib ${LDFLAGS}"
if [[ -d "${rvm_rubies_path}/${rvm_ruby_string}/lib64" ]]
! then __rvm_update_configure_env LDFLAGS="-L${rvm_rubies_path}/${rvm_ruby_string}/lib64 ${LDFLAGS}"
fi
else
libyaml_installed || libyaml # Installs libyaml
! __rvm_update_configure_env CFLAGS="-I${rvm_path}/usr/include ${CFLAGS}"
! __rvm_update_configure_env LDFLAGS="-L${rvm_path}/usr/lib ${LDFLAGS}"
if [[ -d "${rvm_path}/usr/lib64" ]]
! then __rvm_update_configure_env LDFLAGS="-L${rvm_path}/usr/lib64 ${LDFLAGS}"
fi
fi
I also struggled with the same failures with rvm install ruby-2.0.0 for many, MANY hours. I had tried all the different methods to install libyaml; wget source, yum and rvm. I also tried all of the different approaches listed in similar threads. Because I tried all the different methods, I had multiple installations and locations of libyaml.
RVM is perfectly capable of installing the necessary dependencies in ~/.rvm. Simply removing the libyaml files from non-RVM install fixed this issue for me:
sudo rm /usr/local/lib/libyaml*.*
rvm reinstall ruby-2.0.0-p0
Works!
NON-RVM ruby install method.
% uname -a
Linux localhost.localdomain 2.6.32-358.el6.x86_64 #1 SMP Fri Feb 22 00:31:26 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
% cat /etc/redhat-release
CentOS release 6.4 (Final)
% wget http://apt.sw.be/redhat/el5/en/x86_64/dag/RPMS/rpmforge-release-0.3.6-1.el5.rf.x86_64.rpm
% sudo rpm -K rpmforge-release-0.3.6-1.el5.rf.*.rpm"
% sudo rpm -ivh rpmforge-release-0.3.6-1.el5.rf.*.rpm"
DISABLE rpmforge by editing this file and set enabled=0 % sudo vi /etc/yum.repos.d/rpmforge.repo
% grep rpmforge ~/.aliases
alias rpmforge "sudo yum --disablerepo='*' --enablerepo='rpmforge'"
% rpmforge install libyaml libyaml-devel
% sudo yum list installed | grep libyaml
libyaml.x86_64 0.1.4-1.el5.rf @rpmforge
libyaml-devel.x86_64 0.1.4-1.el5.rf @rpmforge
The libyaml-devel is the key.
% tar zxvf ruby-1.9.3-p448.tar.gz
% cd ruby-1.9.3-p448
% ./configure -prefix=$HOME/ruby-1.9.3-p448
% make ; make install
% cd $HOME; ln -s ./ruby-1.9.3-p448 ruby
Update your path and source .cshrc
% echo $PATH
/home/francis/ruby/bin:/usr/sbin:/home/francis/bin:/home/francis/jdk1.7.0_25/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/bin
% which ruby
/home/francis/ruby/bin/ruby
% gem update --system
Set your GEM_HOME in .cshrc and source
% echo $GEM_HOME
% /home/francis/ruby/lib/ruby/gems
% gem install mysql2 pg ruby-debug-ide rails capistrano capistrano-ext passenger
I was having this error and noticed I had different versions of Ruby installed with HomeBrew, along with many gems that I no longer used. So did a full clean up like this:
$ brew remove --force ruby # remove all versions installed
$ sudo rm -rf /usr/local/lib/ruby # remove all gems and leftover files
$ brew install ruby
$ gem install bundler
$ bundle install
If you don't use a Gemfile, make sure you know which gems to reinstall.
In my case all I needed to do was
rm -rf /usr/local/lib/ruby/gems/2.4.0/gems/psych-2.2.4
rm -rf /usr/local/lib/ruby/gems/2.4.0/extensions/x86_64-darwin-16/2.4.0/psych-2.2.4
Now, FWIW, gem list includes
psych (2.2.4, default: 2.2.2)
I spent a few hours trying to get my error to go away and none of the replies here suited my case, so I thought I would post how I solved it...
In my case when I ran gem list | grep psych, I had the following output: psych(default: 3.1.0, default: 3.0.2).
Apparently since version 2.5.0, ruby depends on the newer version of psych (3.1.0) and having both set as default was messing up everything. Notice that I never ended up finding out why those were both set as default - I completely wiped out rvm and ruby versions from my computer due to this.
So in order to remove the older version (3.0.2) from being set as default, head to ~/.rvm/gems/ruby-x.x.x@global/specifications/default. If you run ls | grep psych it will return both versions of the gem here. If you want to maintain 3.1.0 as default just run mv psych-3.0.2.gemspec ../ and then try running gemlist to make sure it is listing only one version as default now...
tl;dr
cd /.rvm/gems/ruby-x.x.x@global/specifications/default
mv psych-3.0.2 ../
Hope this helps someone!
When I switch from 64 bit to 32 bit on Snow Leopard 10.6.8, I had reinstalled ruby (used rvm) to run on 32bit and met the same problem. So I just 'cleanup' all thing that cached by rvm before and problems solved. Hope this tip can help someone.
rvm cleanup all
rvm install ruby_version_here //(This way, rvm will also re-download newest yaml).
BTW, if you still meet this problem, I think you can try:
gem install psych
brew doctor. Does it list a problem with libyaml link? – Stoutierm -rf /usr/local/lib/ruby/gems/ && brew reinstall rubyas stated in the official homebrew-core Gtihub resolved issue – Travis Clarke