I'm having some problems with flymake-mode when editing latex files in emacs 23.4.1. First, when I start the mode I see Flymake:! in the mode line. The manual tells me this is because "Flymake was unable to find the master file for the current buffer.", but it doesn't suggest a solution. apropos tells me there is a function TeX-master-file-ask so I call it to set the master file and try flymake-mode again, but now it gives an error about .#file.tex not being found, but the file does exist.
How can I get flymake mode to work when editing latex files?