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This question was asked in 2010 without specifying the application. Neither of the answers work for the current version of FFMPEG on a 64 bit Fedora 16 system. They both cause the configure script to generate an error. I would appreciate knowing if and how a 32 bit executable can be generated for FFMPEG on a 64 bit Linux system with configure options.

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I'm not sure about FFMPEG, but gcc supports the "-m32" option to force it to build 32-bit code. It might be worth a try to modify your configure script to add this gcc option.