I have R installed via the CRAN repo as instructed at http://cran.r-project.org/bin/linux/ubuntu/. I've been able to install caret fine on a couple other identical Ubuntu 10.04 systems in the past, but today install.packages('caret', dependencies=c('Depends','Suggests')) resulted in the following errors (just a sample). Any hints?
...
** testing if installed package can be loaded
* DONE (dynlm)
ERROR: dependencies ‘reshape’, ‘plyr’, ‘digest’ are not available for package ‘ggplot2’
* removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/ggplot2’
ERROR: dependencies ‘digest’, ‘stringr’, ‘mutatr’, ‘evaluate’ are not available for package ‘testthat’
* removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/testthat’
* installing *source* package ‘ROCR’ ...
** R
...
** testing if installed package can be loaded
* DONE (ROCR)
ERROR: dependencies ‘plyr’, ‘stringr’ are not available for package ‘reshape2’
* removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/reshape2’
* installing *source* package ‘party’ ...
** libs
...
** testing if installed package can be loaded
* DONE (party)
ERROR: dependencies ‘reshape’, ‘plyr’ are not available for package ‘caret’
* removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/caret’
* installing *source* package ‘rocc’ ...
** R
...
* DONE (rocc)
ERROR: dependency ‘reshape2’ is not available for package ‘Cubist’
* removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/Cubist’
The downloaded packages are in
‘/tmp/Rtmp2TsElZ/downloaded_packages’
There were 20 warnings (use warnings() to see them)
> warnings()
Warning messages:
1: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'Rmpi' had non-zero exit status
2: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'rpvm' had non-zero exit status
3: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'rsprng' had non-zero exit status
4: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'XML' had non-zero exit status
5: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'RODBC' had non-zero exit status
6: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'rgl' had non-zero exit status
7: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'RWeka' had non-zero exit status
8: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'shapes' had non-zero exit status
9: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'rgeos' had non-zero exit status
10: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'rgdal' had non-zero exit status
11: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'plyr' had non-zero exit status
12: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'stringr' had non-zero exit status
13: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'latentnet' had non-zero exit status
14: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'reshape' had non-zero exit status
15: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'statnet' had non-zero exit status
16: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'ggplot2' had non-zero exit status
17: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'testthat' had non-zero exit status
18: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'reshape2' had non-zero exit status
19: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'caret' had non-zero exit status
20: In install.packages("caret", dependencies = c("Depends", ... :
installation of package 'Cubist' had non-zero exit status
> library(caret)
Error in library(caret) : there is no package called 'caret'
> sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: x86_64-pc-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_2.13.0
> install.packages('caret', dependencies=c('Depends','Suggests')) # run again
...
ERROR: dependencies ‘digest’, ‘stringr’, ‘mutatr’, ‘evaluate’ are not available for package ‘testthat’
* removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/testthat’
ERROR: dependency ‘itertools’ is not available for package ‘plyr’
* removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/plyr’
ERROR: dependencies ‘RWekajars’, ‘rJava’ are not available for package ‘RWeka’
* removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/RWeka’
ERROR: dependencies ‘plyr’, ‘stringr’ are not available for package ‘reshape2’
* removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/reshape2’
ERROR: dependency ‘plyr’ is not available for package ‘reshape’
* removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/reshape’
ERROR: dependency ‘reshape2’ is not available for package ‘Cubist’
* removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/Cubist’
ERROR: dependencies ‘reshape’, ‘plyr’ are not available for package ‘caret’
* removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/caret’
...
