I have tried probably hundreds of permutations of this code for literally days to try to get a function that will do what I want, and I have finally given up. It feels like it should definitely be doable and I am so close!
I have tried to get back to the nub of things here with my reprex below.
Basically I have a single-row dataframe, with a column containing a list of strings ("concepts"). I want to create an additional column for each of those strings, using mutate
, ideally with the column taking its name from the string, and then to populate the column with the results of a function call (?it doesn't matter which function, for now? - I just need the infrastructure of the function to work.)
I feel, as usual, like I must be missing something obvious... maybe just a syntax error.
I also wonder if I need to use purrr::map
, maybe a simpler vectorised mapping would work fine.
I feel like the fact that new columns are named ..1
rather than the concept name is a bit of a clue as to what is wrong.
I can create the data frame I want by calling each concept manually (see end of reprex) but since the list of concepts is different for different data frames, I want to functionalise this using pipes and tidyverse techniques rather than do it manually.
I've read the following questions to find help:
- How to use map from purrr with dplyr::mutate to create multiple new columns based on column pairs
- How to mutate multiple columns with dynamic variable using purrr:map function?
- (R) Cleaner way to use map() with list-columns
- Add multiple output variables using purrr and a predefined function
- Creating new variables with purrr (how does one go about that?)
- How to compute multiple new columns in a R dataframe with dynamic names
but none of those has quite helped me crack the problem I'm experiencing. [edit: added in last q to that list which may be the technique I need].
<!-- language-all: lang-r -->
# load packages -----------------------------------------------------------
library(rlang)
library(dplyr)
library(tidyr)
library(magrittr)
library(purrr)
library(nomisr)
# set up initial list of tibbles ------------------------------------------
df <- list(
district_population = tibble(
dataset_title = "Population estimates - local authority based by single year",
dataset_id = "NM_2002_1"
),
jsa_claimants = tibble(
dataset_title = "Jobseeker\'s Allowance with rates and proportions",
dataset_id = "NM_1_1"
)
)
# just use the first tibble for now, for testing --------------------------
# ideally I want to map across dfs through a list -------------------------
df <- df[[1]]
# nitty gritty functions --------------------------------------------------
get_concept_list <- function(df) {
dataset_id <- pluck(df, "dataset_id")
nomis_overview(id = dataset_id,
select = c("dimensions", "codes")) %>%
pluck("value", 1, "dimension") %>%
filter(!concept == "geography") %>%
pull("concept")
}
# get_concept_list() returns the strings I need:
get_concept_list(df)
#> [1] "time" "gender" "c_age" "measures"
# Here is a list of examples of types of map* that do various things,
# none of which is what I need it to do
# I'm using toupper() here for simplicity - ultimately I will use
# get_concept_info() to populate the new columns
# this creates four new tibbles
get_concept_list(df) %>%
map(~ mutate(df, {{.x}} := toupper(.x)))
#> [[1]]
#> # A tibble: 1 x 3
#> dataset_title dataset_id ..1
#> <chr> <chr> <chr>
#> 1 Population estimates - local authority based by single year NM_2002_1 TIME
#>
#> [[2]]
#> # A tibble: 1 x 3
#> dataset_title dataset_id ..1
#> <chr> <chr> <chr>
#> 1 Population estimates - local authority based by single year NM_2002_1 GENDER
#>
#> [[3]]
#> # A tibble: 1 x 3
#> dataset_title dataset_id ..1
#> <chr> <chr> <chr>
#> 1 Population estimates - local authority based by single year NM_2002_1 C_AGE
#>
#> [[4]]
#> # A tibble: 1 x 3
#> dataset_title dataset_id ..1
#> <chr> <chr> <chr>
#> 1 Population estimates - local authority based by single year NM_2002_1 MEASUR~
# this throws an error
get_concept_list(df) %>%
map_chr(~ mutate(df, {{.x}} := toupper(.x)))
#> Error: Result 1 must be a single string, not a vector of class `tbl_df/tbl/data.frame` and of length 3
# this creates three extra rows in the tibble
get_concept_list(df) %>%
map_df(~ mutate(df, {{.x}} := toupper(.x)))
#> # A tibble: 4 x 3
#> dataset_title dataset_id ..1
#> <chr> <chr> <chr>
#> 1 Population estimates - local authority based by single year NM_2002_1 TIME
#> 2 Population estimates - local authority based by single year NM_2002_1 GENDER
#> 3 Population estimates - local authority based by single year NM_2002_1 C_AGE
#> 4 Population estimates - local authority based by single year NM_2002_1 MEASUR~
# this does the same as map_df
get_concept_list(df) %>%
map_dfr(~ mutate(df, {{.x}} := toupper(.x)))
#> # A tibble: 4 x 3
#> dataset_title dataset_id ..1
#> <chr> <chr> <chr>
#> 1 Population estimates - local authority based by single year NM_2002_1 TIME
#> 2 Population estimates - local authority based by single year NM_2002_1 GENDER
#> 3 Population estimates - local authority based by single year NM_2002_1 C_AGE
#> 4 Population estimates - local authority based by single year NM_2002_1 MEASUR~
# this creates a single tibble 12 columns wide
get_concept_list(df) %>%
map_dfc(~ mutate(df, {{.x}} := toupper(.x)))
#> # A tibble: 1 x 12
#> dataset_title dataset_id ..1 dataset_title1 dataset_id1 ..11 dataset_title2
#> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
#> 1 Population e~ NM_2002_1 TIME Population es~ NM_2002_1 GEND~ Population es~
#> # ... with 5 more variables: dataset_id2 <chr>, ..12 <chr>,
#> # dataset_title3 <chr>, dataset_id3 <chr>, ..13 <chr>
# function to get info on each concept (except geography) -----------------
# this is the function I want to use eventually to populate my new columns
get_concept_info <- function(df, concept_name) {
dataset_id <- pluck(df, "dataset_id")
nomis_overview(id = dataset_id) %>%
filter(name == "dimensions") %>%
pluck("value", 1, "dimension") %>%
filter(concept == concept_name) %>%
pluck("codes.code", 1) %>%
select(name, value) %>%
nest(data = everything()) %>%
as.list() %>%
pluck("data")
}
# individual mutate works, for comparison ---------------------------------
# I can create the kind of table I want manually using a line like the one below
# df %>% map(~ mutate(., measures = get_concept_info(., concept_name = "measures")))
df %>% mutate(., measures = get_concept_info(df, "measures"))
#> # A tibble: 1 x 3
#> dataset_title dataset_id measures
#> <chr> <chr> <list>
#> 1 Population estimates - local authority based by sin~ NM_2002_1 <tibble [2 x ~
<sup>Created on 2020-02-10 by the [reprex package](https://reprex.tidyverse.org) (v0.3.0)</sup>
{{ }}
does seem promising/usable, but I'm not sure how to implement it here. Perhaps someone else will offer a solution with that. And I share your frustration with spending days doing this. As it happens, I had the same struggle with this exact issue a while back, but it ended up being helpful for you today, and I'm sure you'll pass it on! – Eugene Chong