I'm one of the developers behind the Cryptolens software licensing platform and have been working on licensing systems since the age of 14. In this answer, I have included some tips based on experience acquired over the years.
The best way of solving this is by setting up a license key server that each instance of the application will call in order to verify a license key.
Benefits of a license key server
The advantages with a license key server is that:
- you can always update or block a license key with immediate effect.
- each license key can be locked to certain number of machines (this helps to prevent users from publishing the license key online for others to use).
Considerations
Although verifying licenses online gives you more control over each instance of the application, internet connection is not always present (especially if you target larger enterprises), so we need another way of performing the license key verification.
The solution is to always sign the license key response from the server using a public-key cryptosystem such as RSA or ECC (possibly better if you plan to run on embedded systems). Your application should only have the public key to verify the license key response.
So in case there's no internet connection, you can use the previous license key response instead. Make sure to store both the date and the machine identifier in the response and check that it's not too old (eg. you allow users to be offline at most 30 days, etc) and that the license key response belongs to the correct device.
Note you should always check the certificate of license key response, even if you are connected to the internet), in order to ensure that it has not been changed since it left the server (this still has to be done even if your API to the license key server uses https)
Protecting secret algorithms
Most .NET applications can be reverse engineered quite easily (there is both a diassembler provided by Microsoft to get the IL code and some commercial products can even retrieve the source code in eg. C#). Of course, you can always obfuscate the code, but it's never 100% secure.
I most cases, the purpose of any software licensing solution is to help honest people being honest (i.e. that honest users who are willing to pay don't forget to pay after a trial expires, etc).
However, you may still have some code that you by no means want to leak out to the public (eg. an algorithm to predict stock prices, etc). In this case, the only way to go is to create an API endpoint that your application will call each time the method should be executed. It requires internet connection but it ensures that your secret code is never executed by the client machine.
Implementation
If you don't want to implement everything yourself, I would recommend to take a look at this tutorial (part of Cryptolens)