Does anyone has an idea on how to solve this problem? Can't install devtools in R.
install.packages("devtools") also installing the dependencies ‘ps’, ‘fs’, ‘processx’, ‘xopen’, ‘usethis’, ‘callr’, ‘git2r’, ‘pkgbuild’, ‘pkgload’, ‘rcmdcheck’, ‘roxygen2’
- installing source package ‘fs’ ...
** package ‘fs’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/Users/JoaoMoraes/miniconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/JoaoMoraes/miniconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/JoaoMoraes/miniconda3/include -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/Users/JoaoMoraes/miniconda3/include -fdebug-prefix-map=/opt/concourse/worker/volumes/live/c099f90d-77ff-4dab-4625-1ec5b1f7533d/volume/r-base_1565121802879/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/Users/JoaoMoraes/miniconda3=/usr/local/src/conda-prefix -c error.cc -o error.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/Users/JoaoMoraes/miniconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/JoaoMoraes/miniconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/JoaoMoraes/miniconda3/include -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/Users/JoaoMoraes/miniconda3/include -fdebug-prefix-map=/opt/concourse/worker/volumes/live/c099f90d-77ff-4dab-4625-1ec5b1f7533d/volume/r-base_1565121802879/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/Users/JoaoMoraes/miniconda3=/usr/local/src/conda-prefix -c dir.cc -o dir.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/Users/JoaoMoraes/miniconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/JoaoMoraes/miniconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/JoaoMoraes/miniconda3/include -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/Users/JoaoMoraes/miniconda3/include -fdebug-prefix-map=/opt/concourse/worker/volumes/live/c099f90d-77ff-4dab-4625-1ec5b1f7533d/volume/r-base_1565121802879/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/Users/JoaoMoraes/miniconda3=/usr/local/src/conda-prefix -c utils.cc -o utils.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/Users/JoaoMoraes/miniconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/JoaoMoraes/miniconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/JoaoMoraes/miniconda3/include -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/Users/JoaoMoraes/miniconda3/include -fdebug-prefix-map=/opt/concourse/worker/volumes/live/c099f90d-77ff-4dab-4625-1ec5b1f7533d/volume/r-base_1565121802879/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/Users/JoaoMoraes/miniconda3=/usr/local/src/conda-prefix -c link.cc -o link.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/Users/JoaoMoraes/miniconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/JoaoMoraes/miniconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/JoaoMoraes/miniconda3/include -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/Users/JoaoMoraes/miniconda3/include -fdebug-prefix-map=/opt/concourse/worker/volumes/live/c099f90d-77ff-4dab-4625-1ec5b1f7533d/volume/r-base_1565121802879/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/Users/JoaoMoraes/miniconda3=/usr/local/src/conda-prefix -c path.cc -o path.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/Users/JoaoMoraes/miniconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/JoaoMoraes/miniconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/JoaoMoraes/miniconda3/include -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/Users/JoaoMoraes/miniconda3/include -fdebug-prefix-map=/opt/concourse/worker/volumes/live/c099f90d-77ff-4dab-4625-1ec5b1f7533d/volume/r-base_1565121802879/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/Users/JoaoMoraes/miniconda3=/usr/local/src/conda-prefix -c file.cc -o file.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/Users/JoaoMoraes/miniconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/JoaoMoraes/miniconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/JoaoMoraes/miniconda3/include -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/Users/JoaoMoraes/miniconda3/include -fdebug-prefix-map=/opt/concourse/worker/volumes/live/c099f90d-77ff-4dab-4625-1ec5b1f7533d/volume/r-base_1565121802879/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/Users/JoaoMoraes/miniconda3=/usr/local/src/conda-prefix -c fs.cc -o fs.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/Users/JoaoMoraes/miniconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/JoaoMoraes/miniconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/JoaoMoraes/miniconda3/include -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/Users/JoaoMoraes/miniconda3/include -fdebug-prefix-map=/opt/concourse/worker/volumes/live/c099f90d-77ff-4dab-4625-1ec5b1f7533d/volume/r-base_1565121802879/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/Users/JoaoMoraes/miniconda3=/usr/local/src/conda-prefix -c id.cc -o id.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/Users/JoaoMoraes/miniconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/JoaoMoraes/miniconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/JoaoMoraes/miniconda3/include -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/Users/JoaoMoraes/miniconda3/include -fdebug-prefix-map=/opt/concourse/worker/volumes/live/c099f90d-77ff-4dab-4625-1ec5b1f7533d/volume/r-base_1565121802879/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/Users/JoaoMoraes/miniconda3=/usr/local/src/conda-prefix -c unix/getmode.cc -o unix/getmode.o
x86_64-apple-darwin13.4.0-clang++ -std=gnu++11 -I"/Users/JoaoMoraes/miniconda3/lib/R/include" -DNDEBUG -I./libuv/include -I. -pthread -I"/Users/JoaoMoraes/miniconda3/lib/R/library/Rcpp/include" -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Users/JoaoMoraes/miniconda3/include -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -I/Users/JoaoMoraes/miniconda3/include -fdebug-prefix-map=/opt/concourse/worker/volumes/live/c099f90d-77ff-4dab-4625-1ec5b1f7533d/volume/r-base_1565121802879/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/Users/JoaoMoraes/miniconda3=/usr/local/src/conda-prefix -c RcppExports.cpp -o RcppExports.o
cp -p -f libuv/m4/lt_obsolete.m4 libuv/m4/lt~obsolete.m4
(cd libuv \
&& touch aclocal.m4 \
&& touch -r aclocal.m4 configure Makefile.in \
&& CC="x86_64-apple-darwin13.4.0-clang" CFLAGS="-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/Users/JoaoMoraes/miniconda3/include -fdebug-prefix-map=/opt/concourse/worker/volumes/live/c099f90d-77ff-4dab-4625-1ec5b1f7533d/volume/r-base_1565121802879/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/Users/JoaoMoraes/miniconda3=/usr/local/src/conda-prefix -fPIC " AR="x86_64-apple-darwin13.4.0-ar" RANLIB="x86_64-apple-darwin13.4.0-ranlib" LDFLAGS="-Wl,-dead_strip_dylibs -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/Users/JoaoMoraes/miniconda3/lib -L/Users/JoaoMoraes/miniconda3/lib" ./configure --quiet)
configure: error: in
/private/var/folders/s2/cptzh4ls2knbbd767m5gjx380000gn/T/RtmprlvVOz/R.INSTALL14a3b6572446a/fs/src/libuv': configure: error: C compiler cannot create executables Seeconfig.log' for more details make: *** [Makevars:32: libuv/Makefile] Error 77 ERROR: compilation failed for package ‘fs’ - removing ‘/Users/JoaoMoraes/miniconda3/lib/R/library/fs’ ERROR: dependency ‘ps’ is not available for package ‘processx’
- removing ‘/Users/JoaoMoraes/miniconda3/lib/R/library/processx’
- installing source package ‘git2r’ ...
** package ‘git2r’ successfully unpacked and MD5 sums checked
** using staged installation
checking build system type... x86_64-apple-darwin18.7.0
checking host system type... x86_64-apple-darwin18.7.0
checking for gcc... x86_64-apple-darwin13.4.0-clang
checking whether the C compiler works... no
configure: error: in
/private/var/folders/s2/cptzh4ls2knbbd767m5gjx380000gn/T/RtmpfgNUT5/R.INSTALL14b4c40b5b5e8/git2r': configure: error: C compiler cannot create executables Seeconfig.log' for more details ERROR: configuration failed for package ‘git2r’ - removing ‘/Users/JoaoMoraes/miniconda3/lib/R/library/git2r’ ERROR: dependency ‘processx’ is not available for package ‘xopen’
- removing ‘/Users/JoaoMoraes/miniconda3/lib/R/library/xopen’ ERROR: dependencies ‘fs’, ‘git2r’ are not available for package ‘usethis’
- removing ‘/Users/JoaoMoraes/miniconda3/lib/R/library/usethis’ ERROR: dependency ‘processx’ is not available for package ‘callr’
- removing ‘/Users/JoaoMoraes/miniconda3/lib/R/library/callr’ ERROR: dependency ‘callr’ is not available for package ‘pkgbuild’
- removing ‘/Users/JoaoMoraes/miniconda3/lib/R/library/pkgbuild’ ERROR: dependency ‘pkgbuild’ is not available for package ‘pkgload’
- removing ‘/Users/JoaoMoraes/miniconda3/lib/R/library/pkgload’ ERROR: dependencies ‘callr’, ‘pkgbuild’, ‘xopen’ are not available for package ‘rcmdcheck’
- removing ‘/Users/JoaoMoraes/miniconda3/lib/R/library/rcmdcheck’ ERROR: dependency ‘pkgload’ is not available for package ‘roxygen2’
- removing ‘/Users/JoaoMoraes/miniconda3/lib/R/library/roxygen2’ ERROR: dependencies ‘usethis’, ‘callr’, ‘git2r’, ‘pkgbuild’, ‘pkgload’, ‘rcmdcheck’, ‘roxygen2’ are not available for package ‘devtools’
- removing ‘/Users/JoaoMoraes/miniconda3/lib/R/library/devtools’
The downloaded source packages are in ‘/private/var/folders/s2/cptzh4ls2knbbd767m5gjx380000gn/T/RtmpP8MNFU/downloaded_packages’ Updating HTML index of packages in '.Library' Making 'packages.html' ... done There were 11 warnings (use warnings() to see them)
warnings() Warning messages: 1: In install.packages("devtools") : installation of package ‘fs’ had non-zero exit status 2: In install.packages("devtools") : installation of package ‘processx’ had non-zero exit status 3: In install.packages("devtools") : installation of package ‘git2r’ had non-zero exit status 4: In install.packages("devtools") : installation of package ‘xopen’ had non-zero exit status 5: In install.packages("devtools") : installation of package ‘usethis’ had non-zero exit status 6: In install.packages("devtools") : installation of package ‘callr’ had non-zero exit status 7: In install.packages("devtools") : installation of package ‘pkgbuild’ had non-zero exit status 8: In install.packages("devtools") : installation of package ‘pkgload’ had non-zero exit status 9: In install.packages("devtools") : installation of package ‘rcmdcheck’ had non-zero exit status 10: In install.packages("devtools") : installation of package ‘roxygen2’ had non-zero exit status 11: In install.packages("devtools") : installation of package ‘devtools’ had non-zero exit status
