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Need to know the database size limit for Azure SQL Managed Instance, is that per server or per database?. I mean can I have 2 databases of 7TB each in one managed instance?

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The storage limit is at the instance (server) level. The maximum storage size for MI is 8TB so you would need to split these two 7 TB databases across 2 servers (instances).

https://docs.microsoft.com/en-us/azure/sql-database/sql-database-managed-instance-resource-limits#service-tier-characteristics