Well, as far as I know in the below structure
ehci2: usb@01c1c000 {
compatible = "allwinner,sun8i-h3-ehci", "generic-ehci";
reg = <0x01c1c000 0x100>;
interrupts = <GIC_SPI 76 IRQ_TYPE_LEVEL_HIGH>;
clocks = <&ccu CLK_BUS_EHCI2>, <&ccu CLK_BUS_OHCI2>;
resets = <&ccu RST_BUS_EHCI2>, <&ccu RST_BUS_OHCI2>;
phys = <&usbphy 2>;
phy-names = "usb";
status = "disabled";
};
clocks = <&ccu CLK_BUS_EHCI2>, <&ccu CLK_BUS_OHCI2>; represents consumer clocks i.e. input clocks and is called "phandle + clock specifier pairs". As you mentioned CLK_BUS_OHCI2 has value 39, that means USB controller will take input clock from the output 39 of ccu clock source.
In the dtsi file from where you posted the above screenshot, there should be a structure that defines the ccu for example like this below:
ccu: clk@01c20060 {
#clock-cells = <1>;
compatible = "allwinner,sun7i-a20-ahb-gates-clk";
reg = <0x01c20060 0x8>;
clocks = <&ahb>;
clock-output-names = "ahb_usb0", "ahb_ehci0",
"ahb_ohci0", "ahb_ehci1", "ahb_ohci1",
"ahb_ss", "ahb_dma", "ahb_bist", "ahb_mmc0",
"ahb_mmc1", "ahb_mmc2", "ahb_mmc3", "ahb_ms",
"ahb_nand", "ahb_sdram", "ahb_ace",
"ahb_emac", "ahb_ts", "ahb_spi0", "ahb_spi1",
"ahb_spi2", "ahb_spi3", "ahb_sata",
"ahb_hstimer", "ahb_ve", "ahb_tvd", "ahb_tve0",
"ahb_tve1", "ahb_lcd0", "ahb_lcd1", "ahb_csi0",
"ahb_csi1", "ahb_hdmi1", "ahb_hdmi0",
"ahb_de_be0", "ahb_de_be1", "ahb_de_fe0",
"ahb_de_fe1", "ahb_gmac", "ahb_ehci2",
"ahb_mali";
};
In the above structure there are multiple clock source outputs, so clock source 39 should be utilised by the above USB controller for taking clock input, note that #clock-cells = <1>; represents multiple clock output and #clock-cells = <0>; is for single clock output.
The ccu structure is just an example.