Good day. I have a problem with installation of agricolae package (R version is 3.2.3. When I enter install.packages("agricolae") I have following:
Installing package into ‘C:/Users/(User name)/Documents/R/win-library/3.2’ (as ‘lib’ is unspecified) Warning in install.packages : dependency ‘spdep’ is not available also installing the dependencies ‘httpuv’, ‘later’, ‘promises’, ‘shiny’, ‘miniUI’, ‘questionr’, ‘klaR’ There are binary versions available but the source versions are later: binary source needs_compilation httpuv 1.3.3 1.4.5 TRUE shiny 1.0.2 1.1.0 FALSE miniUI 0.1.1 0.1.1.1 FALSE questionr 0.6.0 0.6.3 FALSE klaR 0.6-12 0.6-14 FALSE agricolae 1.2-4 1.2-8 FALSE Do you want to install from sources the package which needs compilation? y/n: y Packages which are only available in source form, and may need compilation of C/C++/Fortran: ‘later’ ‘promises’ Do you want to attempt to install these from sources? y/n: y installing the source packages ‘httpuv’, ‘later’, ‘promises’, ‘shiny’, ‘miniUI’, ‘questionr’, ‘klaR’, ‘agricolae’
After downloading of all packages Rstudio shows me this:
* installing *source* package 'later' ... ** package 'later' successfully unpacked and MD5 sums checked ********************************************** WARNING: this package has a configure script It probably needs manual configuration ************************************************ libs
*** arch - i386
g++ -m32 -I"C:/PROGRA~1/R/R-32~1.3/include" -DNDEBUG -DTHREADS_H_SUPPORT=-1 -I"C:/Users/(User name)/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/(User name)/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m32 -I"C:/PROGRA~1/R/R-32~1.3/include" -DNDEBUG -DTHREADS_H_SUPPORT=-1 -I"C:/Users/(User name)/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/(User name)/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c callback_registry.cpp -o callback_registry.o
gcc -m32 -I"C:/PROGRA~1/R/R-32~1.3/include" -DNDEBUG -DTHREADS_H_SUPPORT=-1 -I"C:/Users/(User name)/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/(User name)/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
g++ -m32 -I"C:/PROGRA~1/R/R-32~1.3/include" -DNDEBUG -DTHREADS_H_SUPPORT=-1 -I"C:/Users/(User name)/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/(User name)/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c later.cpp -o later.o
g++ -m32 -I"C:/PROGRA~1/R/R-32~1.3/include" -DNDEBUG -DTHREADS_H_SUPPORT=-1 -I"C:/Users/(User name)/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/(User name)/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c later_native.cpp -o later_native.o
g++ -m32 -I"C:/PROGRA~1/R/R-32~1.3/include" -DNDEBUG -DTHREADS_H_SUPPORT=-1 -I"C:/Users/(User name)/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/(User name)/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c later_posix.cpp -o later_posix.o
g++ -m32 -I"C:/PROGRA~1/R/R-32~1.3/include" -DNDEBUG -DTHREADS_H_SUPPORT=-1 -I"C:/Users/(User name)/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/(User name)/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c later_win32.cpp -o later_win32.o
g++ -m32 -I"C:/PROGRA~1/R/R-32~1.3/include" -DNDEBUG -DTHREADS_H_SUPPORT=-1 -I"C:/Users/(User name)/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/(User name)/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c timer_posix.cpp -o timer_posix.o
g++ -m32 -I"C:/PROGRA~1/R/R-32~1.3/include" -DNDEBUG -DTHREADS_H_SUPPORT=-1 -I"C:/Users/(User name)/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/(User name)/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c timestamp_unix.cpp -o timestamp_unix.o
g++ -m32 -I"C:/PROGRA~1/R/R-32~1.3/include" -DNDEBUG -DTHREADS_H_SUPPORT=-1 -I"C:/Users/(User name)/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/(User name)/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c timestamp_win32.cpp -o timestamp_win32.o
gcc -m32 -I"C:/PROGRA~1/R/R-32~1.3/include" -DNDEBUG -DTHREADS_H_SUPPORT=-1 -I"C:/Users/(User name)/Documents/R/win-library/3.2/Rcpp/include" -I"C:/Users/(User name)/Documents/R/win-library/3.2/BH/include" -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c tinycthread/tinycthread.c -o tinycthread/tinycthread.o
g++ -m32 -shared -s -static-libgcc -o later.dll tmp.def RcppExports.o callback_registry.o init.o later.o later_native.o later_posix.o later_win32.o timer_posix.o timestamp_unix.o timestamp_win32.o ./tinycthread/tinycthread.o -Ld:/RCompile/r-compiling/local/local323/lib/i386 -Ld:/RCompile/r-compiling/local/local323/lib -LC:/PROGRA~1/R/R-32~1.3/bin/i386 -lR
./tinycthread/tinycthread.o:tinycthread.c:(.text+0x5a9): undefined reference to '_imp___ftime_s'
./tinycthread/tinycthread.o:tinycthread.c:(.text+0x9b0): undefined reference to '_imp___ftime_s'
./tinycthread/tinycthread.o:tinycthread.c:(.text+0xbc9): undefined reference to '_imp___ftime_s'
./tinycthread/tinycthread.o:tinycthread.c:(.text+0xec9): undefined reference to '_imp___ftime_s'
collect2: ld returned 1 exit status
no DLL was created
ERROR: compilation failed for package 'later'
removing 'C:/Users/(User name)/Documents/R/win-library/3.2/later'
Warning in install.packages : running command '"C:/PROGRA~1/R/R-32~1.3/bin/x64/R" CMD INSTALL -l "C:\Users(User name)\Documents\R\win-library\3.2" C:\Users(User name)\AppData\Local\Temp\Rtmpi439vE/downloaded_packages/later_0.7.5.tar.gz' had status 1
Warning in install.packages : installation of package ‘later’ had non-zero exit status ERROR: dependency 'later' is not available for package 'promises' removing 'C:/Users/(User name)/Documents/R/win-library/3.2/promises'
Warning in install.packages : running command '"C:/PROGRA~1/R/R-32~1.3/bin/x64/R" CMD INSTALL -l "C:\Users(User name)\Documents\R\win-library\3.2" C:\Users(User name)\AppData\Local\Temp\Rtmpi439vE/downloaded_packages/promises_1.0.1.tar.gz' had status 1
Warning in install.packages : installation of package ‘promises’ had non-zero exit status ERROR: dependencies 'promises', 'later' are not available for package 'httpuv' removing 'C:/Users/(User name)/Documents/R/win-library/3.2/httpuv'
Warning in install.packages : running command '"C:/PROGRA~1/R/R-32~1.3/bin/x64/R" CMD INSTALL -l "C:\Users(User name)\Documents\R\win-library\3.2" C:\Users(User name)\AppData\Local\Temp\Rtmpi439vE/downloaded_packages/httpuv_1.4.5.tar.gz' had status 1
Warning in install.packages : installation of package ‘httpuv’ had non-zero exit status ERROR: dependencies 'httpuv', 'later', 'promises' are not available for package 'shiny' removing 'C:/Users/(User name)/Documents/R/win-library/3.2/shiny'
Warning in install.packages : running command '"C:/PROGRA~1/R/R-32~1.3/bin/x64/R" CMD INSTALL -l "C:\Users(User name)\Documents\R\win-library\3.2" C:\Users(User name)\AppData\Local\Temp\Rtmpi439vE/downloaded_packages/shiny_1.1.0.tar.gz' had status 1
Warning in install.packages : installation of package ‘shiny’ had non-zero exit status
ERROR: dependency 'shiny' is not available for package 'miniUI' removing 'C:/Users/(User name)/Documents/R/win-library/3.2/miniUI'
Warning in install.packages : running command '"C:/PROGRA~1/R/R-32~1.3/bin/x64/R" CMD INSTALL -l "C:\Users(User name)\Documents\R\win-library\3.2" C:\Users(User name)\AppData\Local\Temp\Rtmpi439vE/downloaded_packages/miniUI_0.1.1.1.tar.gz' had status 1
Warning in install.packages : installation of package ‘miniUI’ had non-zero exit status ERROR: dependencies 'shiny', 'miniUI' are not available for package 'questionr'
removing 'C:/Users/(User name)/Documents/R/win-library/3.2/questionr' Warning in install.packages :
running command '"C:/PROGRA~1/R/R-32~1.3/bin/x64/R" CMD INSTALL -l "C:\Users(User name)\Documents\R\win-library\3.2" C:\Users(User name)\AppData\Local\Temp\Rtmpi439vE/downloaded_packages/questionr_0.6.3.tar.gz' had status 1
Warning in install.packages : installation of package ‘questionr’ had non-zero exit status ERROR: dependency 'questionr' is not available for package 'klaR'
removing 'C:/Users/(User name)/Documents/R/win-library/3.2/klaR'
Warning in install.packages : running command '"C:/PROGRA~1/R/R-32~1.3/bin/x64/R" CMD INSTALL -l "C:\Users(User name)\Documents\R\win-library\3.2" C:\Users(User name)\AppData\Local\Temp\Rtmpi439vE/downloaded_packages/klaR_0.6-14.tar.gz' had status 1
Warning in install.packages : installation of package ‘klaR’ had non-zero exit status ERROR: dependencies 'klaR', 'spdep' are not available for package 'agricolae'
removing 'C:/Users/(User name)/Documents/R/win-library/3.2/agricolae'
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-32~1.3/bin/x64/R" CMD INSTALL -l "C:\Users(User name)\Documents\R\win-library\3.2" C:\Users(User name)\AppData\Local\Temp\Rtmpi439vE/downloaded_packages/agricolae_1.2-8.tar.gz' had status 1
Warning in install.packages :
installation of package ‘agricolae’ had non-zero exit status
The downloaded source packages are in ‘C:\Users(User name)\AppData\Local\Temp\Rtmpi439vE\downloaded_packages’
Any ideas how to solve it? Thanks!
