I was having the same issue, however on Symfony's documentation regarding putting symfony in production mode with Apache, they provide this:
ServerName domain.tld
ServerAlias www.domain.tld
DocumentRoot /var/www/project/public
<Directory /var/www/project/public>
AllowOverride None
Order Allow,Deny
Allow from All
<IfModule mod_rewrite.c>
Options -MultiViews
RewriteEngine On
RewriteCond %{REQUEST_FILENAME} !-f
RewriteRule ^(.*)$ index.php [QSA,L]
</IfModule>
</Directory>
# uncomment the following lines if you install assets as symlinks
# or run into problems when compiling LESS/Sass/CoffeeScript assets
# <Directory /var/www/project>
# Options FollowSymlinks
# </Directory>
# optionally disable the RewriteEngine for the asset directories
# which will allow apache to simply reply with a 404 when files are
# not found instead of passing the request into the full symfony stack
<Directory /var/www/project/public/bundles>
<IfModule mod_rewrite.c>
RewriteEngine Off
</IfModule>
</Directory>
ErrorLog /var/log/apache2/project_error.log
CustomLog /var/log/apache2/project_access.log combined
# optionally set the value of the environment variables used in the application
#SetEnv APP_ENV prod
#SetEnv APP_SECRET <app-secret-id>
#SetEnv DATABASE_URL "mysql://db_user:db_pass@host:3306/db_name"
Notice this part (just above):
# optionally set the value of the environment variables used in the application
#SetEnv APP_ENV prod
#SetEnv APP_SECRET <app-secret-id>
#SetEnv DATABASE_URL "mysql://db_user:db_pass@host:3306/db_name"
Setting your environment variables here, will work (with docker) and no hacks required for Symfony's index.php.