We have a CodePipeline set up which uses CodeDeploy to deploy the latest updates from our repository on GitHub to an EC2 instance. This works fine, except for one issue: everything we have in our .gitignore file is deleted from the server whenever a deployment is performed.
For instance, this is a WordPress site, so we have wp-config.php and wp-content/uploads excluded from the repository. When a deployment runs, it deletes these files rendering the site unusable.
Our desired behavior is for CodeDeploy to overwrite existing files, but also ignore any files/directories not included in the repository so they can remain untouched. By default there seems to be a step that "clears out" the deployment destination before adding the new files, but we need to skip that.
Is there any setting, either in the console or appspec.yml, which will allow us to make deployments without having anything deleted? It seems like this would be a very common use case...if we can't make deployments like this then I'll have to just do all our updates via SFTP, which is pretty lame.