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Does Sonar use Jacoco plugin for the code coverage?? Or is it possible if Sonarqube can handle independently the code coverage without using the jacoco plugin??

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Basically, SonarQube server accepts reporting in a certain format and hence you could upload different reports to SonarQube server. JaCoCo exec-files can also be uploaded into SonarQube server.

You could get good set of steps here.