clarify some basics about Confluent and how manage communication between Confluent and Kafka
First things first, there is no single application called "Confluent" that can be started all on its own.
There's is nothing to configure for Kafka or Zookeeper. The Confluent Platform doesn't add anything on top of the existing Apache Kafka you have (presumably, via Hortonworks or Cloudera).
In fact, those companies do add patches to Kafka that would be slightly different than the base Apache versions you would get from Confluent.
That being said, if you read through each of extra services that Confluent provides, you'll notice either a Zookeeper or a Bootstrap server configuration option. Fill out those fields, start the respective services, and you're good to go.
what to actually run from Confluent
Look in the bin
directory, you can find all the start scripts. From the comments, looks like you're trying to use Connect Distributed (which should already be installed by any recent Kafka installation, it's not Confluent specific), and Schema Registry. You'll have to be more specific about the errors that you get, but the config files are all in the etc path.
Unless you're using KSQL, REST Proxy or Control Center, there's not much to run because, as mentioned, Kafka Connect is included with the base Apache Kafka project and Hortonworks is maintaining their own Schema Registry project
2 zookeepers installed by Ambari
This is a highly non-recommended setup. Please install an odd number of Zookeepers. 3 or 5, preferably