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Can we make batch inserts into google cloud sql 2nd generation instance from Standard App engine instance ??

If so what is the limit ?

Please down vote the question, I have checked the docs but couldn't find it.

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Yes it's possible, you can create the batch request in the same way you would creating the batch request in a standard MySQL instance from a standard application (here an example in java). The limit reported in the documentation are 1000 calls for a single batch request