With the release of SSDT 2016 (GA), I've loaded SQL Server 2016 GA Developer Edition, the new SSMS 2016 stand-alone build, and even Visual Studio 2015 Update 2 (Professional edition) and Visual Studio still crashes anytime I attempt to open an SSIS package or create a new solution using the SSIS template (including the import wizard). I've reinstalled using the suggested order (SQL Server 2016, SSMS, SSDT) as well as just Visual Studio 2015 followed by SSDT. Both result in the same crash. I'm able to create and open all other solution types (SSRS, SSAS, SQLCLR) so it seems to be an issue specific to SSIS. The Connect bug report can be found (along with the attachments and everything MSFT has asked for) here: https://connect.microsoft.com/SQLServer/feedback/details/2781125/ssis-projects-crash-visual-studio
The error in Visual Studio is as follows:
Problem signature:
Problem Event Name: APPCRASH
Application Name: devenv.exe
Application Version: 14.0.25420.1
Application Timestamp: 57685d85
Fault Module Name: KERNELBASE.dll
Fault Module Version: 6.3.9600.18340
Fault Module Timestamp: 5736541b
Exception Code: c06d007e
Exception Offset: 00014878
OS Version: 6.3.9600.2.0.0.272.7
Locale ID: 1033
Additional Information 1: d3a5
Additional Information 2: d3a5b2a34c74c92cf7c3ff2061a46015
Additional Information 3: 86f5
Additional Information 4: 86f5db7ad561caf63ca32f7aba7c4416