I've a relatively simple shiny app that plots some data in different ways that runs fine locally but I am trying to deploy to shinyapps.io following the instructions here and have hit some errors that I've no idea how to resolve (or where to start looking). I authenticate without any problems but when I go to deploy it I get the following error message...
> shinyapps::deployApp('~/Dropbox/R/nmisc/inst/shiny/cams/')
Preparing to deploy application...Update application currently deployed at
https://slackline.shinyapps.io/cams/ ? [Y/n] y
DONE
Uploading bundle for application:81835...Error in findLocalRepoForPkg(pkg,
repos, fatal = fatal):No package 'XML' found in local repositories specified
Initially I had not explicitly loaded the XML library (and guessed it might be being pulled in as a dependency by something else). I have it installed on my system anyway so added it to the libraries that were loaded by ui.R and server.R but still get the same error.
I'm stumped and can't work out whats going on, but is it a case that XML is not available on shinyapps.io? That would seem a bit strange.
The traceback() in case it is useful/informative...
> traceback()
18:stop("No package '", pkg, "' found in local repositories specified")
17:findLocalRepoForPkg(pkg, repos, fatal = fatal)
16:getPackageRecordsLocalReposImpl(pkgName, repos, fatal = fatal)
15:FUN(X[[i]], ...)
14:lapply(pkgNames, function(pkgName) {
getPackageRecordsLocalReposImpl(pkgName, repos, fatal = fatal)
})
13:getPackageRecordsLocalRepos(pkgNames, local.repos, fatal = !fallback.ok)
12:getPackageRecords(
inferredPkgsNotInLib, project = project, available = available,
check.lockfile = TRUE, fallback.ok = fallback.ok
)
11:packrat::.snapshotImpl(project = bundleDir, snapshot.sources = FALSE,
verbose = FALSE)
10:withCallingHandlers(
expr, message = function(c)
invokeRestart("muffleMessage")
)
9:suppressMessages(packrat::.snapshotImpl(
project = bundleDir,
snapshot.sources = FALSE, verbose = FALSE
))
8:performPackratSnapshot(bundleDir)
7:addPackratSnapshot(appDir, implicit_dependencies)
6:snapshotDependencies(appDir, inferDependencies(appMode, hasParameters))
5:createAppManifest(
bundleDir, appMode, contentCategory, hasParameters,
appPrimaryDoc, assetTypeName, users
)
4:bundleApp(target$appName, appDir, appFiles, appPrimaryDoc, assetTypeName,
contentCategory)
3:force(code)
2:withStatus(paste0("Uploading bundle for ", assetTypeName, ": ",
application$id), {bundlePath <-bundleApp(target$appName,
appDir, appFiles, appPrimaryDoc, assetTypeName, contentCategory)
bundle <- client$uploadApplication(application$id, bundlePath)})
1:shinyapps::deployApp("~/Dropbox/R/nmisc/inst/shiny/cams/")
And my ui.R and server.R follow (nmisc is a personal package that contains cams.df data frame which is being plotted).
ui.R
library(dplyr)
library(ggplot2)
library(nmisc)
library(shiny)
library(magrittr)
library(RColorBrewer)
library(XML)
shinyUI(fluidPage(
titlePanel("Cam Comparison"),
sidebarPanel(
width = 4,
p(
"Welcome, this website provides comparisons of different climbing cams.
Its a work in progress, if you have feedback, comments or ideas please
email the",
HTML(
'<a href="mailto:[email protected]?subject=\'Cam site
suggestions\'">author</a>'
),"."
)
),
sidebarPanel(
width = 4,
selectInput(
inputId = 'to.compare',
label = 'Choose cams to compare :',
choices = c(unique(cams.df$manufacturer.model)),
## selected = 'All',
multiple = TRUE
)
),
sidebarPanel(
width = 4,
selectInput(
inputId = 'free.x.axis',
label = 'Free x-axis :',
choices = c('Yes', 'No'),
selected = 'No',
multiple = FALSE
)
),
mainPanel(width = 12,
column(
12,
tabsetPanel(
tabPanel("Range by Cam",
fluidRow(
plotOutput("all.manufacturer",
width = 'auto',
height = '1000px')
)),
tabPanel("Range by Model",
fluidRow(
plotOutput("model.range",
width = 'auto',
height = '1000px')
)),
tabPanel("Range v Strength",
fluidRow(
plotOutput("range.strength",
width = 'auto',
height = '1000px')
)),
tabPanel("Range v Weight",
fluidRow(
plotOutput("range.weight",
width = 'auto',
height = '1000px')
)),
tabPanel("ToDo",
fluidRow(
shiny::p(
"Here are a list of some of the things I've not
done, would like to, or that have been suggested..."
),
shiny::HTML(
"<ul><li> Align similar size cams in the same
plot rather than faceted. <li> Colour code cams to manufacturers colours.
<li> Mix and match individual cams from a manufacturers range.<li>
Select an individual cam and show all similar cams across manufacturers
(possibly restricted to those of interest).
</ul>"
)
))
)
))
))
server.R
library(dplyr)
library(ggplot2)
library(nmisc)
library(shiny)
library(magrittr)
library(RColorBrewer)
library(XML)
shinyServer(function(input, output) {
# Subset the data
#
# See Lesson 5 and 6
#
# http://shiny.rstudio.com/tutorial/lesson5/
# http://shiny.rstudio.com/tutorial/lesson6/
# https://stackguides.com/questions/32148144/condition-filter-in-dplyr-
# based-on-shiny-input
dataInput <- reactive({
if (is.null(input$to.compare)) {
cams.df
}
else{
filter(cams.df,
manufacturer.model %in% input$to.compare)
}
})
## Set scales based on responses
scales <- reactive({
if (input$free.x.axis == "Yes") {
'free_x'
}
else{
'free_y'
}
})
## By Manufacturer
output$all.manufacturer <- renderPlot({
cam.plot <- cams(
df = dataInput(),
smooth = 'loess',
free.scales = scales(),
wrap.col = 6,
text.size = 16
)
cam.plot$all.manufacturer
})
## By Model Range
output$model.range <- renderPlot({
cam.plot <- cams(
df = dataInput(),
smooth = 'loess',
free.scales = scales(),
wrap.col = 6,
text.size = 16
)
cam.plot$manufacturer.model
})
## Range v Strength
output$range.strength <- renderPlot({
cam.plot <- cams(
df = dataInput(),
smooth = 'loess',
free.scales = scales(),
wrap.col = 6,
text.size = 16,
exclude.outlier = TRUE
)
cam.plot$range.strength
})
## Range v Weight
output$range.weight <- renderPlot({
cam.plot <- cams(
df = dataInput(),
smooth = 'loess',
free.scales = scales(),
wrap.col = 6,
text.size = 16
)
cam.plot$range.weight
})
})
XMLno package installed, when trying to loadlibrary(xml).( It used to work normal earlier). The easy fix for me wasremove.packages("XML")and reinstall it withdependencies = TRUE.install.packages('XML', dependencies = TRUE). – user5249203colorspacein the same manner. I've reinstalled all packages from scratch and now get an complaint about my own personal packagenmiscnot being found in local repositories yet I have it installed locally (under~/.R/lib/set from~/.Renviron) and its loaded. – slackline