As you said, the dependencies you declare in your bower.json and package.json get downloaded to bower_components and node_modules
When you do you an ember build command what happens is that all the code you decide to import in your ember-cli-build.js will get dumped to the vendor.js / vendor.css file. All your application code (templates/routes/components/controllers/services) will be placed in my-app-name.js. All your application styles will go to the my-app-name.css file. All these files will be placed in the dist directory so that you can deploy it.
See this sample ember-cli-build.js file:
var EmberApp = require('ember-cli/lib/broccoli/ember-app');
module.exports = function(defaults) {
var app = new EmberApp(defaults, {
//CSS - Content of these files will go to "vendor.css"
app.import('vendor/css/bootstrap.css');
app.import('bower_components/datatables/media/css/jquery.dataTables.css');
app.import('bower_components/datatables/media/css/dataTables.bootstrap.css');
app.import('vendor/css/plugins/toastr/toastr.min.css');
// Javascript - Content of these files will go to "vendor.js"
app.import('vendor/js/bootstrap.js');
app.import('vendor/js/plugins/metisMenu/jquery.metisMenu.js');
app.import('vendor/js/plugins/toastr/toastr.min.js');
app.import('bower_components/datatables/media/js/jquery.dataTables.js');
return app.toTree();
};
The CSS imports will go to the vendor.css file and the JS imports will go to the vendor.js files.
The content of your my-app-name.css comes from the app/styles folder.
If you do ember build --environment production the ember build process will also fingertring your assets (append a hash at the end of the filename and generate an appropriate reference in the index.html file).