I know this thread is old and I suck at explaining, but I'll share my approach.
So for example 5x5x5 trees. What you want is for your noise function to return the same value for an area of 5x5 blocks, so that even outside of the chunk, you can still check if you should generate a tree or not.
// Here the returned value is different for every block
float value = simplexNoise(x * frequency, z * frequency) * amplitude;
// Here it will return the same value for an area of blocks (you should use floorDiv instead of dividing, or you it will get negative coordinates wrong (-3 / 5 should be -1, not 0 like in normal division))
float value = simplexNoise(Math.floorDiv(x, 5) * frequency, Math.floorDiv(z, 5) * frequency) * amplitude;
And now we'll plant a tree. For this we need to check what x y z position this current block is relative to the tree's starting position, so we can know what part of the tree this block is.
if(value > 0.8) { // A certain threshold (checking if tree should be generated at this area)
int startX = Math.floorDiv(x, 5) * 5; // flooring the x value to every 5 units to get the start position
int startZ = Math.floorDiv(z, 5) * 5; // flooring the z value to every 5 units to get the start position
// Getting the starting height of the trunk (middle of the tree , that's why I'm adding 2 to the starting x and starting z), which is 1 block over the grass surface
int startY = height(startX + 2, startZ + 2) + 1;
int relx = x - startX; // block pos relative to starting position
int relz = z - startZ;
for(int j = startY; j < startY + 5; j++) {
int rely = j - startY;
byte tile = tree[relx][rely][relz]; // Get the needing block at this part of the tree
tiles[i][j][k] = tile;
}
}
The tree 3d array here is almost like a "prefab" of the tree, which you can use to know what block to set at the position relative to the starting point. (God I don't know how to explain this, and having english as my fifth language doesn't help me either ;-; feel free to improve my answer or create a new one). I've implemented this in my engine, and it's totally working. The structures can be as big as you want, with no chunk pre loading needed. The one problem with this method is that the trees or structures will we spawned almost within a grid, but this can easily be solved with multiple octaves with different offsets.
So recap
for (int i = 0; i < 64; i++) {
for (int k = 0; k < 64; k++) {
int x = chunkPosToWorldPosX(i); // Get world position
int z = chunkPosToWorldPosZ(k);
// Here the returned value is different for every block
// float value = simplexNoise(x * frequency, z * frequency) * amplitude;
// Here it will return the same value for an area of blocks (you should use floorDiv instead of dividing, or you it will get negative coordinates wrong (-3 / 5 should be -1, not 0 like in normal division))
float value = simplexNoise(Math.floorDiv(x, 5) * frequency, Math.floorDiv(z, 5) * frequency) * amplitude;
if(value > 0.8) { // A certain threshold (checking if tree should be generated at this area)
int startX = Math.floorDiv(x, 5) * 5; // flooring the x value to every 5 units to get the start position
int startZ = Math.floorDiv(z, 5) * 5; // flooring the z value to every 5 units to get the start position
// Getting the starting height of the trunk (middle of the tree , that's why I'm adding 2 to the starting x and starting z), which is 1 block over the grass surface
int startY = height(startX + 2, startZ + 2) + 1;
int relx = x - startX; // block pos relative to starting position
int relz = z - startZ;
for(int j = startY; j < startY + 5; j++) {
int rely = j - startY;
byte tile = tree[relx][rely][relz]; // Get the needing block at this part of the tree
tiles[i][j][k] = tile;
}
}
}
}
So 'i' and 'k' are looping withing the chunk, and 'j' is looping inside the structure. This is pretty much how it should work.
And about the rivers, I personally haven't done it yet, and I'm not sure why you need to set the blocks around the chunk when generating them ( you could just use perlin worms and it would solve problem), but it's pretty much the same idea, and for your cities too.