MatLab: get username in Parallel Computing

0
votes

I'm using MatLab Parallel Computing Toolbox on several computers in my office: I've enstabilished a cluster managed by a custom scheduler (the MatLab's own kind: the MJS).

Everything seems to run smoothly as long as I run scripts and functions that have the same path on every PC (e.g. C:\Sample.m), but unfortunately I need to access to functions that are in the Dropbox folder of every computer (for example the file C:\Users\myusername\Dropbox\Sample.m).

To solve the problem, I tried something like this:

parfor j=1:100
   myusername=getenv('username');
   cd(['C:\Users\',myusername,'\Dropbox'])
   Sample(1,2,3);
end

But with this code the cd function set the current folder in C:\Users\SYSTEM\Dropbox and obviously it can't find Sample.m in it.

Has anybody any way around this problem?

2
matlabparallel-processing

2 Answers

1
votes

You have several options here. First, you could simply compute your username outside the parfor loop

myusername = getenv('username');
parfor ...
    ...
    cd(['c:\Users\', myusername, '\Dropbox']);
    ...
end

If you're running a more recent version of MATLAB, then there is automatic dependency analysis that should transfer the functions that you need to the workers when required - which version are you using? You can use listAutoAttachedFiles to see what files have been attached to your pool.

Finally, if you get your MJS administrator to run at security level 3, then the workers will run with your credentials, and getenv('username') will behave as you expect on the workers.

0
votes

I solved this by creating a function called "nome":

function [username]=nome()
     username='Stefano';
end

I put this function in the matlabroot in every PC on the cluster BUT instead of putting 'Stefano' in each one I put the name of the user in which the Dropbox function is placed. The I had to use cd in the right way:

cdorig=cd;
spmd
    cd(matlabroot);
    username=nome();
end

spmd
   mypath=strsplit(cdorig,'\');
    mypath{3}=username;
    cd(fullfile(mypath{1:end}));  
end

And it works.