I am currently working with R Studio to produce PDF documents with R/knitr in LaTex. Within these documents I want to present part of my results in tables that I want to refer to in the text. I produce these tables using the xtable package within R and it is working perfectly and giving me the right tables. So far so good but when it come to referencing I ran into some troubles. At the moment the resulting PDF output refers to the section in which the table lies. I searched around in some LaTex help files and it is stated that this happens when the label of the floating object is placed before the caption. However when I checked the output of xtable it was placed after the caption. Does anyone have a solution for this? Here is an example code similar to the one I used that gives me the same kind of result in the PDF (I left all packages used in LaTex and R in to make sure it is not something caused by some interference with these).
\documentclass[preprint,authoryear]{elsarticle}
\usepackage[a4paper]{geometry}
\usepackage{natbib}
\usepackage{mathpazo}
\usepackage{booktabs}
\usepackage{dcolumn}
\usepackage[breaklinks]{hyperref}
\usepackage{hyperref,url}
\usepackage{lscape}
\usepackage[usenames,dvipsnames,svgnames,table]{xcolor}
\usepackage{amssymb}
\usepackage{gensymb}
\usepackage[allow-number-unit-breaks=true]{siunitx}
\usepackage[T1]{fontenc}
\usepackage[utf8]{inputenc}
\usepackage[version=3]{mhchem}
\usepackage[section]{placeins}
\usepackage[colorinlistoftodos]{todonotes}
\usepackage{float}
\usepackage{lineno}
\begin{document}
\section{Test}
This is a test. You can see the result in Tab. \ref{tab:Test}.
\section{Table}
<<Ini,eval=TRUE,include=FALSE,echo=FALSE,warning=FALSE,error=FALSE,cache=FALSE>>=
#set chunk options
opts_chunk$set(echo=FALSE,warning=FALSE,message=FALSE,dev.args=list(pointsize=12),fig.pos="!h",dpi=500)
require(stringr)
require(reshape2)
require(lubridate)
library(plyr)
library(lattice) #Needed for multi-panel graphs
library(mgcv) #Needed for smoothing curves in scatterplots
library(ggplot2)
library(ggmap)
require(gridExtra)
library(scales)
library(xtable)
require(nlme)
library(zoo)
@
<<results='asis',echo=FALSE>>=
Test<-data.frame(Test=c(1:3),a=c(4:6))
print(xtable(Test,caption="Test table",label="tab:Test",
digits=2),
include.rownames=FALSE,
caption.placement="top",
latex.environments = "left")
@
\end{document}
The result from the xtable code looks like this:
% latex table generated in R 3.0.3 by xtable 1.7-4 package
% Tue Jun 02 09:27:38 2015
\begin{table}[ht]
\begin{left}
\caption{Test table}
\label{tab:Test}
\begin{tabular}{rr}
\hline
Test & a \\
\hline
1 & 4 \\
2 & 5 \\
3 & 6 \\
\hline
\end{tabular}
\end{left}
\end{table}
When I try to run this I get 4 warning messages that seem kind of strange but there is still a PDF output. All 4 warnings are around the code that is produced by xtable. Here the output from the Log within R Studio:
! Missing $ inserted.
<inserted text>
$
l.81 \begin{left}
I've inserted a begin-math/end-math symbol since I think
you left one out. Proceed, with fingers crossed.
! Missing delimiter (. inserted).
<to be read again>
\global
l.82 \caption
{Test table}
I was expecting to see something like `(' or `\{' or
`\}' here. If you typed, e.g., `{' instead of `\{', you
should probably delete the `{' by typing `1' now, so that
braces don't get unbalanced. Otherwise just proceed.
Acceptable delimiters are characters whose \delcode is
nonnegative, or you can use `\delimiter <delimiter code>'.
! Missing $ inserted.
<inserted text>
$
l.82 \caption{Test table}
I've inserted a begin-math/end-math symbol since I think
you left one out. Proceed, with fingers crossed.
! Missing \right. inserted.
<inserted text>
\right .
l.82 \caption{Test table}
I've inserted something that you may have forgotten.
(See the <inserted text> above.)
With luck, this will get me unwedged. But if you
really didn't forget anything, try typing `2' now; then
my insertion and my current dilemma will both disappear.
I hope there is someone that is able to help me!
PS: Please note that I am not able to post a screen shot of my PDF output because I don't have enough reputation.
