I followed this documentation for moving jobs between Jenkins servers. After choosing to 'Reload Configuration from Disk' I am finding that the majority of jobs were migrated however a handful of jobs are not presented within the Jenkins dashboard. Looking at $JENKINS_HOME/jobs, I see directories for jobs which did not load and confirmed the config files are valid XML. I have looked at the System Log (via the Jenkins GUI) but find nothing pertinent. Rebooting the machine and reloading configuration from disk does not resolve the problem.
Interestingly, I can see the previous build history for a specific job if I choose to create a new job with the exact same name as a job which will not load. The config.xml is overwritten when this occurs. I am hoping to preserve the job configurations without manually recreating them.