I am trying to install PyFFTW into Enthought Canopy I'm on a Mac running Mavericks The initial command and output are below the problem seems to be with it finding fftw3.h and gcc failing right after that can anyone help? Thanks
Canopy 64bit) iz9mbpro:User iz9$ pip install pyfftw Downloading/unpacking pyfftw Downloading pyFFTW-0.9.2.tar.gz (336kB): 336kB downloaded Running setup.py (path:/Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/setup.py) egg_info for package pyfftw
Installing collected packages: pyfftw Running setup.py install for pyfftw skipping '/Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/pyfftw/pyfftw.c' Cython extension (up-to-date) building 'pyfftw.pyfftw' extension gcc -fno-strict-aliasing -fno-common -dynamic -arch x86_64 -isysroot /Developer/SDKs/MacOSX10.6.sdk -DNDEBUG -g -O3 -arch x86_64 -isysroot /Developer/SDKs/MacOSX10.6.sdk -I/Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/include -I/Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/pyfftw -I/Applications/Canopy.app/appdata/canopy-1.4.1.1975.macosx-x86_64/Canopy.app/Contents/lib/python2.7/site-packages/numpy/core/include -I/Applications/Canopy.app/appdata/canopy-1.4.1.1975.macosx-x86_64/Canopy.app/Contents/include/python2.7 -I/Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/include -I/Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/pyfftw -I/Applications/Canopy.app/appdata/canopy-1.4.1.1975.macosx-x86_64/Canopy.app/Contents/lib/python2.7/site-packages/numpy/core/include -I/Applications/Canopy.app/appdata/canopy-1.4.1.1975.macosx-x86_64/Canopy.app/Contents/include/python2.7 -c /Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/pyfftw/pyfftw.c -o build/temp.macosx-10.6-x86_64-2.7/Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/pyfftw/pyfftw.o In file included from /Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/pyfftw/pyfftw.c:256: In file included from /Applications/Canopy.app/appdata/canopy-1.4.1.1975.macosx-x86_64/Canopy.app/Contents/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /Applications/Canopy.app/appdata/canopy-1.4.1.1975.macosx-x86_64/Canopy.app/Contents/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: In file included from /Applications/Canopy.app/appdata/canopy-1.4.1.1975.macosx-x86_64/Canopy.app/Contents/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: /Applications/Canopy.app/appdata/canopy-1.4.1.1975.macosx-x86_64/Canopy.app/Contents/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by " \ ^ /Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/pyfftw/pyfftw.c:260:10: fatal error: 'fftw3.h' file not found #include "fftw3.h" ^ 1 warning and 1 error generated. error: command 'gcc' failed with exit status 1 Complete output from command /Users/iz9/Library/Enthought/Canopy_64bit/User/bin/python -c "import setuptools, tokenize;file='/Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/setup.py';exec(compile(getattr(tokenize, 'open', open)(file).read().replace('\r\n', '\n'), file, 'exec'))" install --record /var/folders/sc/wm52xk5528b2m95ztnh15clj5lkhmb/T/pip-29rHyR-record/install-record.txt --single-version-externally-managed --compile --install-headers /Users/iz9/Library/Enthought/Canopy_64bit/User/include/site/python2.7: running install
running build
running build_py
creating build
creating build/lib.macosx-10.6-x86_64-2.7
creating build/lib.macosx-10.6-x86_64-2.7/pyfftw
copying pyfftw/init.py -> build/lib.macosx-10.6-x86_64-2.7/pyfftw
copying pyfftw/_version.py -> build/lib.macosx-10.6-x86_64-2.7/pyfftw
copying pyfftw/np_fft.py -> build/lib.macosx-10.6-x86_64-2.7/pyfftw
creating build/lib.macosx-10.6-x86_64-2.7/pyfftw/builders
copying pyfftw/builders/init.py -> build/lib.macosx-10.6-x86_64-2.7/pyfftw/builders
copying pyfftw/builders/_utils.py -> build/lib.macosx-10.6-x86_64-2.7/pyfftw/builders
copying pyfftw/builders/builders.py -> build/lib.macosx-10.6-x86_64-2.7/pyfftw/builders
creating build/lib.macosx-10.6-x86_64-2.7/pyfftw/interfaces
copying pyfftw/interfaces/init.py -> build/lib.macosx-10.6-x86_64-2.7/pyfftw/interfaces
copying pyfftw/interfaces/_utils.py -> build/lib.macosx-10.6-x86_64-2.7/pyfftw/interfaces
copying pyfftw/interfaces/cache.py -> build/lib.macosx-10.6-x86_64-2.7/pyfftw/interfaces
copying pyfftw/interfaces/numpy_fft.py -> build/lib.macosx-10.6-x86_64-2.7/pyfftw/interfaces
copying pyfftw/interfaces/scipy_fftpack.py -> build/lib.macosx-10.6-x86_64-2.7/pyfftw/interfaces
running build_ext
skipping '/Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/pyfftw/pyfftw.c' Cython extension (up-to-date)
building 'pyfftw.pyfftw' extension
creating build/temp.macosx-10.6-x86_64-2.7
creating build/temp.macosx-10.6-x86_64-2.7/Users
creating build/temp.macosx-10.6-x86_64-2.7/Users/iz9
creating build/temp.macosx-10.6-x86_64-2.7/Users/iz9/Library
creating build/temp.macosx-10.6-x86_64-2.7/Users/iz9/Library/Enthought
creating build/temp.macosx-10.6-x86_64-2.7/Users/iz9/Library/Enthought/Canopy_64bit
creating build/temp.macosx-10.6-x86_64-2.7/Users/iz9/Library/Enthought/Canopy_64bit/User
creating build/temp.macosx-10.6-x86_64-2.7/Users/iz9/Library/Enthought/Canopy_64bit/User/build
creating build/temp.macosx-10.6-x86_64-2.7/Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw
creating build/temp.macosx-10.6-x86_64-2.7/Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/pyfftw
gcc -fno-strict-aliasing -fno-common -dynamic -arch x86_64 -isysroot /Developer/SDKs/MacOSX10.6.sdk -DNDEBUG -g -O3 -arch x86_64 -isysroot /Developer/SDKs/MacOSX10.6.sdk -I/Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/include -I/Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/pyfftw -I/Applications/Canopy.app/appdata/canopy-1.4.1.1975.macosx-x86_64/Canopy.app/Contents/lib/python2.7/site-packages/numpy/core/include -I/Applications/Canopy.app/appdata/canopy-1.4.1.1975.macosx-x86_64/Canopy.app/Contents/include/python2.7 -I/Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/include -I/Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/pyfftw -I/Applications/Canopy.app/appdata/canopy-1.4.1.1975.macosx-x86_64/Canopy.app/Contents/lib/python2.7/site-packages/numpy/core/include -I/Applications/Canopy.app/appdata/canopy-1.4.1.1975.macosx-x86_64/Canopy.app/Contents/include/python2.7 -c /Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/pyfftw/pyfftw.c -o build/temp.macosx-10.6-x86_64-2.7/Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/pyfftw/pyfftw.o
In file included from /Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/pyfftw/pyfftw.c:256:
In file included from /Applications/Canopy.app/appdata/canopy-1.4.1.1975.macosx-x86_64/Canopy.app/Contents/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Applications/Canopy.app/appdata/canopy-1.4.1.1975.macosx-x86_64/Canopy.app/Contents/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
In file included from /Applications/Canopy.app/appdata/canopy-1.4.1.1975.macosx-x86_64/Canopy.app/Contents/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760:
/Applications/Canopy.app/appdata/canopy-1.4.1.1975.macosx-x86_64/Canopy.app/Contents/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
warning "Using deprecated NumPy API, disable it by " \
^
/Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/pyfftw/pyfftw.c:260:10: fatal error: 'fftw3.h' file not found
include "fftw3.h"
^
1 warning and 1 error generated.
error: command 'gcc' failed with exit status 1
Cleaning up... Command /Users/iz9/Library/Enthought/Canopy_64bit/User/bin/python -c "import setuptools, tokenize;file='/Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw/setup.py';exec(compile(getattr(tokenize, 'open', open)(file).read().replace('\r\n', '\n'), file, 'exec'))" install --record /var/folders/sc/wm52xk5528b2m95ztnh15clj5lkhmb/T/pip-29rHyR-record/install-record.txt --single-version-externally-managed --compile --install-headers /Users/iz9/Library/Enthought/Canopy_64bit/User/include/site/python2.7 failed with error code 1 in /Users/iz9/Library/Enthought/Canopy_64bit/User/build/pyfftw Storing debug log for failure in /Users/iz9/.pip/pip.log
