Drawing minor ticks (not grid ticks) in ggplot2 in a date format axis

Question

I'm trying to get some graphics done for a publication in black and white, and I'm having some trouble with the axis.

I need to plot the subticks for the data in the axis (not the grid), and I found a trick around it by using the annotation_logticks(base=2, sides="trbl") with base 2, since my data is not relevant in log.

But that doesn't seem to work for the y axis, which is in date format type (xts).

The graph I got so far is the one bellow, all I need is to remove the background grid (that part should be easy) and to add the ticks on the y axis (that's the difficult part for me). enter image description here

This is the code I used to do the graph:

ratio_plot_start_time = "01:45"
ratio_plot_end_time = "02:10"
channelNo = 1
p <- ggplot(onsetratios, aes(x=ratio*100, y=onset)) + geom_point(aes(y=onset))
p <- p + ylim(as.POSIXct(paste(date, ratio_plot_start_time, sep=" ")), as.POSIXct(paste(date, ratio_plot_end_time, sep=" ")))
p <- p + geom_errorbar(aes(ymin=onset-error, ymax=onset+error), width=0.0)
p <- p + xlab(expression("percent of peak counts"))+ ylab(expression("UT Time (2012 May 17)")) + theme(aspect.ratio = 2/(1+sqrt(5)))
p <- p + theme_bw(base_size = 14, base_family = "Helvetica") + annotate("text",x=max(onsetratios$ratio),y=as.POSIXct(paste(date, ratio_plot_end_time, sep=" ")),vjust=4,hjust=2,label=paste("F", channelNo, "'"))
p <- p + annotation_logticks(base=2, sides="trbl")

And the data used for building the graph is:

> onsetratios
        ratio               onset    error
1  0.01092106 2012-05-17 01:49:03 19.05407
2  0.02092106 2012-05-17 01:49:35 14.89534
3  0.03092106 2012-05-17 01:51:01 12.82914
4  0.04092106 2012-05-17 01:50:22 21.45099
5  0.05092106 2012-05-17 01:50:22 21.45099
6  0.06092106 2012-05-17 01:51:13 20.09877
7  0.07092106 2012-05-17 01:51:13 20.09877
8  0.08092106 2012-05-17 01:51:13 20.09877
9  0.09092106 2012-05-17 01:51:13 20.09877
10 0.10092106 2012-05-17 01:52:34 15.53187
11 0.11092106 2012-05-17 01:53:53 14.79303
12 0.12092106 2012-05-17 01:53:53 14.79303
13 0.13092106 2012-05-17 01:53:32 17.12521
14 0.14092106 2012-05-17 01:53:32 17.12521
15 0.15092106 2012-05-17 01:53:32 17.12521
16 0.16092106 2012-05-17 01:53:32 17.12521
17 0.17092106 2012-05-17 01:46:30 36.96600
18 0.18092106 2012-05-17 01:46:30 36.96600
19 0.19092106 2012-05-17 01:46:30 36.96600

tonytonov tonytonov · Accepted Answer · 2014-08-13T06:14:34

I do not advise to use annotation_logticks. Here's the intended way to do that. I removed the title since I do not have the font installed.

Edit:

I borrowed the function from here, and it works fine, provided by manual breaks construction:

onsetratios <- read.table("clipboard", head=T)
onsetratios$onset <- as.POSIXct(onsetratios$onset)
ratio_plot_start_time = "01:45"
ratio_plot_end_time = "02:10"
channelNo = 1
start_date <- as.POSIXct(paste(date, ratio_plot_start_time, sep=" "))
end_date <- as.POSIXct(paste(date, ratio_plot_end_time, sep=" "))
date <- "2012-05-17"
p <- ggplot(onsetratios, aes(x=ratio*100, y=onset)) + geom_point(aes(y=onset)) +
  geom_errorbar(aes(ymin=onset-error, ymax=onset+error), width=0.0) +
  xlab(expression("percent of peak counts"))+ ylab(expression("UT Time (2012 May 17)")) + theme(aspect.ratio = 2/(1+sqrt(5))) + 
  theme_bw(base_size = 14) + 
  annotate("text",x=max(onsetratios$ratio),y=as.POSIXct(paste(date, ratio_plot_end_time, sep=" ")),vjust=4,hjust=2,label=paste("F", channelNo, "'")) +
  ylim(c(start_date, end_date))

insert_minor <- function(major_labs, n_minor) {labs <- 
                                                 c( sapply( major_labs, function(x) c(x, rep("", 4) ) ) )
                                               labs[1:(length(labs)-n_minor)]}

date_br1 <- seq(from = start_date, to = end_date, by = "1 min")
date_br5 <- seq(from = start_date, to = end_date, by = "5 min")
p + scale_x_continuous(breaks = 0:20, labels = insert_minor(seq(0, 20, by=5), 4)) + 
    scale_y_datetime(breaks = date_br1, labels = insert_minor(format(date_br5, "%H:%M"), 4)) + 
  theme(panel.grid.minor=element_blank(), panel.grid.major=element_blank())

enter image description here

Drawing minor ticks (not grid ticks) in ggplot2 in a date format axis

1 Answers

Edit: