Missing functionality of Imagej variant Fiji

1
votes

I am trying to use a variant of ImageJ, Fiji for analysis of some microscopy images. When I try to "Open Next" to get to the net image, nothing happens.

In the standard version of ImageJ this feature works, and raises an error if it fails.

It seems like some underlying code is missing. I have been unable to find posts that seem to have the same issue. Could it be that I am missing some module for this to work? Could it be somethiing to do with Java?

Any help would be much appreciated, thank you.

1
imagej
With my up-to-date Fiji installation on Mac OSX, Open Next works as expected. It might be a file system-specific bug though. Please report the bug via Help > Report a bug, so the relevant information about your system is transmitted to the developers. - Jan Eglinger

1 Answers

1
votes

There seems to be a file type-specific issue with File > Open Next: when handling .czi files (and other files usually opened using Bio-Formats), the ij.io.Opener#getFileType(path) method returns the wrong type and leads to failure of the search for the next file. See this thread on the ImageJ mailing list.