library(WGCNA) Error in loadNamespace

0
votes

I reinstalled RSTUDIO & R from scratch.
What package is "訴mpute"? it is not compute.es

Also, if anyone knows how to get rid of the KANJI/Chinese character, please let me know; already removed all other languages leaving only English & rebooted.

perhaps no 'impute' for 3.0.3?

Warning in install.packages : package 訴mpute・is not available (for R version 3.0.3)

thanks

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(R) library(WGCNA) Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no package called 訴mpute・Error: package or namespace load failed for 糎GCNA・ (R) sessionInfo() R version 3.0.3 (2014-03-06) Platform: x86_64-w64-mingw32/x64 (64-bit)

locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages: [1] parallel splines grid datasets grDevices stats graphics tcltk utils
[10] methods base

other attached packages: [1] compute.es_0.2-3 mlbench_2.1-1 randomGLM_1.02-1 doParallel_1.0.8
[5] iterators_1.0.6 MASS_7.3-29 Hmisc_3.14-3 Formula_1.1-1
[9] survival_2.37-7 lattice_0.20-27 flashClust_1.01-2 dynamicTreeCut_1.60-1 [13] RODBC_1.3-10 ada_2.0-3 rpart_4.1-5 foreach_1.4.1
[17] stringr_0.6.2 debug_1.3.1 snow_0.3-13 ROCR_1.0-5
[21] gplots_2.12.1 rattle_3.0.2 RSNNS_0.4-4 Rcpp_0.11.1

loaded via a namespace (and not attached): [1] bitops_1.0-6 caTools_1.16 cluster_1.14.4 codetools_0.2-8
[5] compiler_3.0.3 gdata_2.13.2 gtools_3.3.1 KernSmooth_2.23-10 [9] latticeExtra_0.6-26 matrixStats_0.8.14 mvbutils_2.7.4.1 R.methodsS3_1.6.1
[13] RColorBrewer_1.0-5 tools_3.0.3

1
r

1 Answers

0
votes

from : http://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCNA/

install.packages(c("dynamicTreeCut", "cluster", "flashClust", "Hmisc", "reshape", "foreach", "doParallel") ) source("http://bioconductor.org/biocLite.R") biocLite("impute")

(R) library(WGCNA)

* * Package WGCNA 1.34 loaded. * * Important note: It appears that your system supports multi-threading, * but it is not enabled within WGCNA in R. * To allow multi-threading within WGCNA with all available cores, use * * allowWGCNAThreads() * * within R. Use disableWGCNAThreads() to disable threading if necessary. * Alternatively, set the following environment variable on your system: * * ALLOW_WGCNA_THREADS= * * for example * * ALLOW_WGCNA_THREADS=4 * * To set the environment variable in linux bash shell, type * * export ALLOW_WGCNA_THREADS=4 * * before running R. Other operating systems or shells will * have a similar command to achieve the same aim.

*

Attaching package: 糎GCNA・ The following object is masked from 叢ackage:stats・

cor