You can always check the rotation of the image using Matrix and rotate it accordingly. 
This code goes in onActivityResult-->
    BitmapFactory.Options bmOptions = new BitmapFactory.Options();
    bmOptions.inJustDecodeBounds = false;
    bmOptions.inPurgeable = true;
        Bitmap cameraBitmap = BitmapFactory.decodeFile(filePath);//get file path from intent when you take iamge.
        ByteArrayOutputStream bos = new ByteArrayOutputStream();
        cameraBitmap.compress(Bitmap.CompressFormat.JPEG, 100, bos);
        ExifInterface exif = new ExifInterface(filePath);
        float rotation = exif.getAttributeInt(ExifInterface.TAG_ORIENTATION, ExifInterface.ORIENTATION_NORMAL);  
        System.out.println(rotation);
        float rotationInDegrees = exifToDegrees(rotation);
        System.out.println(rotationInDegrees);
        Matrix matrix = new Matrix();
        matrix.postRotate(rotationInDegrees);
        Bitmap scaledBitmap = Bitmap.createBitmap(cameraBitmap);
        Bitmap rotatedBitmap = Bitmap.createBitmap(cameraBitmap , 0, 0, scaledBitmap .getWidth(), scaledBitmap .getHeight(), matrix, true);
        FileOutputStream fos=new FileOutputStream(filePath);
        rotatedBitmap.compress(Bitmap.CompressFormat.JPEG, 100, fos);
        fos.flush();
        fos.close();
OnActivityResult Code Ends here.
This function below is used to get rotation:-
    private static float exifToDegrees(float exifOrientation) {        
    if (exifOrientation == ExifInterface.ORIENTATION_ROTATE_90) { return 90; } 
    else if (exifOrientation == ExifInterface.ORIENTATION_ROTATE_180) {  return 180; } 
    else if (exifOrientation == ExifInterface.ORIENTATION_ROTATE_270) {  return 270; }            
    return 0;    
 }