I'm using the AzureContinuousDeployment.11.xaml Visual Studio 2013 Template for CI builds from visualstudio.com to an Azure website and it's working great.
However, I need to keep additional files on the server (the app creates files). If I was using the "Web deploy" method, I'd simply disable the "Remove additional files at destination" property, but I don't see an option for that using the Azure deployment template.
I should be able to add /p:SkipExtraFilesOnServer=True to the MSBuild arguments in the build definition, but it isn't working. Files are still being deleted from the web server when I deploy.
I've also tried creating a publish profile and adding it to the template. It hasn't worked either.