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Alright, the question seems a bit convoluted. But here's what I am doing. I generate doxygen documentation from my commented code and then generate latex pdfs out of by configuring doxygen to do so. I have one small problem, when I include an html file using \htmlinclude, that link or file does not get included in the latex generated pdf. How can I achieve this? i.e. Include the included html in doxygen in latex?

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\htmlinclude definitely won't do this. From the manual: "The command is equivalent to pasting the file in the documentation and placing \htmlonly and \endhtmlonly commands around it." - so any included with \htmlinclude will only appear in HTML output, not LaTeX.

If you want to insert verbatim HTML (i.e. you're quoting that file of HTML as an example, rather than wanting the HTML to be interpreted by Doxygen) then you could try\verbinclude instead.

Otherwise, I think you need to give a bit more detail about what it is you are trying to achieve.