The following assumes you are using marked as your Markdown engine. If you are using RoboSkirt or something else, you can do something similar, just adapt to use their module instead.
First, make sure you have the marked node module in your top level project:
npm install --save marked
Then add a helper function to your docpad.coffee that makes the marked function available in templates:
docpadConfig = {
templateData:
# Specify some site properties
marked: require('marked')
}
Now you can use this in your .eco files:
<div>
<%- @marked(@document.someMetaProperty) %>
</div>