I solved it like this:
In my Extbase Controller i have instantiated t3lib_stdGraphic an transformed the imageas via Imagick. The i saved this image to a directory -> Because i need it in a persistent memory.
The code maybe helpful because i didn't found any good resource for imagick-using in Extbase.
$this->stdGraphic = \TYPO3\CMS\Core\Utility\GeneralUtility::makeInstance('t3lib_stdGraphic' );
$this->stdGraphic->absPrefix = PATH_site;
$this->stdGraphic->init();
$data = getimagesize("fileadmin/buegel_anprobe/".$artikel->getKurznr().".png");
$width = $data[0];
$height = $data[1];
$transform = $this->stdGraphic->imageMagickConvert("fileadmin/".$artikelname.".png",'png', $width, $height, ' -flop', '', '', 1);
$filepath = $transform[3]
' -flop' is the important argument to flip the image vertically
Then i passed the path to the fluid template and insert it via image-viewhelper
Good resource was the following reference: http://doc-typo3.ameos.com/4.1.0/classt3lib__stdGraphic.html