After upgrading to OSX 10.8.4, background Java processes started placing a Java Cup icon in the Dock. It causes the currently active window to loose focus which is very annoying when running some script that forks many short running Java processes (headless). The file menu (top of the screen next to the apple symbol will show the name of the class file that Java is running, e.g. org.apache.hadoop.util.RunJar).
Since I'm not explicitly launching these Java commands, I've tried putting alias java="java -Djava.awt.headless=true" in .profile but this doesn't seem to help.
Has anyone run into this and know how to fix it?
Thank you.