Get annotations from ObjectPropertyAssertion OWLAPI

Question

I'm using the OWL API for OWL 2.0 and there is one thing I can't seem to figure out. I have an OWL/XML file and I would like to retrieve the annotations for my object property assertions. Here are snippets from my OWL/XML and Java code:

OWL:

<ObjectPropertyAssertion>
  <Annotation>
    <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
    <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#string">Bob likes sushi</Literal>
  </Annotation>
  <ObjectProperty IRI="#Likes"/>
  <NamedIndividual IRI="#UserBob"/>
  <NamedIndividual IRI="#FoodSushi"/>
</ObjectPropertyAssertion>

Java:

OWLIndividual bob = manager.getOWLDataFactory().getOWLNamedIndividual(IRI.create(base + "#UserBob"));
OWLObjectProperty likes = manager.getOWLDataFactory().getOWLObjectProperty(IRI.create(base + "#Likes"));
OWLIndividual sushi = factory.getOWLNamedIndividual(IRI.create(base + "#FoodSushi"));

OWLObjectPropertyAssertionAxiom ax =  factory.getOWLObjectPropertyAssertionAxiom(likes, bob, sushi);

  for(OWLAnnotation a: ax.getAnnotations()){
    System.out.println(a.getValue());
  }

Problem is, nothing gets returned even though the OWL states there is one rdfs:comment. It has been troublesome to find any documentations on how to retrieve this information. Adding axioms with comments or whatever is not an issue.

Does other code within the if(ax.isAnnotated()) { … } block get executed? That is, is as.isAnnotated() returning true? As it stands, the issue could lie with it returning false, or with ax.getAnnotations() returning an empty iterable. It will help to determine which is happening. — Joshua Taylor
The ax.isAnnotated() does return false and the Set<OWLAnnotations> is empty. I have removed the if-statement to avoid confusion. Thanks. — VimKin
If you're using factory.getOWLObjectPropertyAssertionAxiom(…), are you creating a new axiom, as opposed to retrieving one from the ontology? What happens if you use OWLOntology#getObjectPropertyAssertionAxioms to find the axiom that you're looking for, and check whether that one isAnnotated? — Joshua Taylor

loopasam loopasam · Accepted Answer · 2013-06-17T21:40:44

In order to retrieve the annotations you need to walk over the axioms of interest. Using the getSomething() adds things to the ontology, as noted in the comments, it is not possible to retrieve your axiom this way. Here is the code adapted from the OWL-API guide:

//Get rdfs:comment
final OWLAnnotationProperty comment = factory.getRDFSComment();

//Create a walker
OWLOntologyWalker walker = 
                        new OWLOntologyWalker(Collections.singleton(ontology));

//Define what's going to visited
OWLOntologyWalkerVisitor<Object> visitor = 
                                new OWLOntologyWalkerVisitor<Object>(walker) {

  //In your case you visit the annotations made with rdfs:comment
  //over the object properties assertions
  @Override
  public Object visit(OWLObjectPropertyAssertionAxiom axiom) {
    //Print them
    System.out.println(axiom.getAnnotations(comment));
    return null;
  }
};

//Walks over the structure - triggers the walk
walker.walkStructure(visitor);

Get annotations from ObjectPropertyAssertion OWLAPI

1 Answers