passing parameters to R function used plyr

Question

I can'n solve one question. Want to write a function like this:

   f.describe <- function(.data, .var, .by)
   {
        require(plyr)

        res <- ddply(.data, .by, 
    summarize, 
    N = sum(!is.na(.var))
    `Mean (SD)`=sprintf("%5.2f (%5.2f)", 
                       mean(.var, na.rm=TRUE), sd=sd(.var, na.rm=TRUE)),
     Median = sprintf("%5.2f", median(.var))    
        )
    res
   }

But I can't find the way to pass a variable for processing (.var). Have this error:

Error eval(expr, envir, enclos) : object '.var' was not found (translated from other language, so it could be not verbatim for English users)

I tried eval, substitute but have no solution... Many thanks for help. Sometimes I do not understand the rules R uses for evaluation.

plyr does have known issues with scoping of variables inside functions. — baptiste
You mean . (dot) function. I know, but walking around I still have no solution... — crow16384
unfortunately I cannot find the discussion I had when I got stuck on a similar problem. My ugly workaround was to use <<- to push a local variable into the global environment where plyr could find it... — baptiste
@baptiste: Thanks for an advise. I do not want use global variables. Possible to find ugly solutions with parse, but I belive that there are some beautiful and in the language rules :) — crow16384
related question and discussion (including comment from @hadley, suggesting that Jan van der Laan 's solution below is the preferred workaround) — baptiste

Jan van der Laan Jan van der Laan · Accepted Answer · 2013-05-01T15:15:10

In this case it might be easier to pass a function to ddply instead of using summarize:

f.describe <- function(.data, .var, .by) {
    require(plyr)

    ddply(.data, .by, function(d) {
       c(N = sum(!is.na(d[[.var]])),
       `Mean (SD)`=sprintf("%5.2f (%5.2f)", 
           mean(d[[.var]], na.rm=TRUE), 
           sd=sd(d[[.var]], na.rm=TRUE)),
       Median = sprintf("%5.2f", median(d[[.var]])))    
    })
}

passing parameters to R function used plyr

1 Answers