How does the HyperLogLog algorithm work?

Question

I've been learning about different algorithms in my spare time recently, and one that I came across which appears to be very interesting is called the HyperLogLog algorithm - which estimates how many unique items are in a list.

This was particularly interesting to me because it brought me back to my MySQL days when I saw that "Cardinality" value (which I always assumed until recently that it was calculated not estimated).

So I know how to write an algorithm in O(n) that will calculate how many unique items are in an array. I wrote this in JavaScript:

function countUniqueAlgo1(arr) {
    var Table = {};
    var numUnique = 0;
    var numDataPoints = arr.length;
    for (var j = 0; j < numDataPoints; j++) {
        var val = arr[j];
        if (Table[val] != null) {
            continue;
        }
        Table[val] = 1;
        numUnique++;
    }
    return numUnique;
}

But the problem is that my algorithm, while O(n), uses a lot of memory (storing values in Table).

I've been reading this paper about how to count duplicates in a list in O(n) time and using minimal memory.

It explains that by hashing and counting bits or something one can estimate within a certain probability (assuming the list is evenly distributed) the number of unique items in a list.

I've read the paper, but I can't seem to understand it. Can someone give a more layperson's explanation? I know what hashes are, but I don't understand how they are used in this HyperLogLog algorithm.

This paper (research.google.com/pubs/pub40671.html) also summarize the HyperLogLog algorithm and some improvements. I think it's easier to understanding than the original paper. — zhanxw
Just a hint on nomenclature: Some people use the word set to describe a collection of unique items. To them, your question might make better sense if you used the term list or array instead. — Paddy3118

Juan Lopes Juan Lopes · Accepted Answer · 2012-10-04T19:19:54

The main trick behind this algorithm is that if you, observing a stream of random integers, see an integer which binary representation starts with some known prefix, there is a higher chance that the cardinality of the stream is 2^(size of the prefix).

That is, in a random stream of integers, ~50% of the numbers (in binary) starts with "1", 25% starts with "01", 12,5% starts with "001". This means that if you observe a random stream and see a "001", there is a higher chance that this stream has a cardinality of 8.

(The prefix "00..1" has no special meaning. It's there just because it's easy to find the most significant bit in a binary number in most processors)

Of course, if you observe just one integer, the chance this value is wrong is high. That's why the algorithm divides the stream in "m" independent substreams and keep the maximum length of a seen "00...1" prefix of each substream. Then, estimates the final value by taking the mean value of each substream.

That's the main idea of this algorithm. There are some missing details (the correction for low estimate values, for example), but it's all well written in the paper. Sorry for the terrible english.

How does the HyperLogLog algorithm work?

3 Answers