I have a shiny app working with flexdashboard that I would like to continue the developing process that started some time ago.
This app uses RBioFormats package from Bioconductor, and nowadays I cannot start my app. After some trials, this happens when start a flexdashboard with shiny. The responsable of this crash come from trying to load RBioFormats library on flexdashboard-shiny app.
On the other hand, on a pure shiny app (with no flexdashboard), or with pure flexdashboard non-shiny, the app runs correctly. I'm using RBioFormats in other scripts, and it works correctly too.
Here I post a simple crashing example:
---
title: "Untitled"
output: flexdashboard::flex_dashboard
runtime: shiny
---
```{r setup, include=FALSE}
library(flexdashboard)
library(RBioFormats)
```
Column
-----------------------------------------------------------------------
### Chart A
```{r}
```
This, throws this error:
Session info:
R version 3.5.3 (2019-03-11)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Arch Linux
Matrix products: default
BLAS: /usr/lib/libblas.so.3.8.0
LAPACK: /usr/lib/liblapack.so.3.8.0
locale:
[1] LC_CTYPE=es_ES.UTF-8 LC_NUMERIC=C LC_TIME=es_ES.UTF-8
[4] LC_COLLATE=es_ES.UTF-8 LC_MONETARY=es_ES.UTF-8 LC_MESSAGES=es_ES.UTF-8
[7] LC_PAPER=es_ES.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=es_ES.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.5.3 htmltools_0.3.6 tools_3.5.3 flexdashboard_0.5.1.1
[5] yaml_2.2.0 Rcpp_1.0.1 rmarkdown_1.12 knitr_1.22
[9] jsonlite_1.6 xfun_0.6 digest_0.6.18 evaluate_0.13
>
