When I qsub a script that runs a java program I get this error:
Exception in thread "main" java.lang.UnsatisfiedLinkError: /usr/java/jdk1.6.0_16/jre/lib/amd64/xawt/libmawt.so: libXtst.so.6: cannot open shared object file: No such file or directory at java.lang.ClassLoader$NativeLibrary.load(Native Method) at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1778) at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1674) at java.lang.Runtime.load0(Runtime.java:770) at java.lang.System.load(System.java:1003) at java.lang.ClassLoader$NativeLibrary.load(Native Method) at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1778) at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1695) at java.lang.Runtime.loadLibrary0(Runtime.java:823) at java.lang.System.loadLibrary(System.java:1028) at sun.security.action.LoadLibraryAction.run(LoadLibraryAction.java:50) at java.security.AccessController.doPrivileged(Native Method) at java.awt.Toolkit.loadLibraries(Toolkit.java:1592) at java.awt.Toolkit.(Toolkit.java:1614) at java.awt.Font.(Font.java:210) at savant.settings.BrowserSettings.(BrowserSettings.java:37) at savant.util.NetworkUtils.getSeekableStreamForURI(NetworkUtils.java:185) at savant.data.sources.BAMDataSource.(BAMDataSource.java:62) at IReckon.WholeGenomeExecution.main(WholeGenomeExecution.java:208)
However, when I qrsh into a node and run the script I don't get an error.
I'm running qsub like this: qsub -cwd -V
Maybe there is some environment variable I need to set, but wouldn't -V handle that?
